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Bacteriol."},{"key":"key\n\t\t\t\t20170508190032_B61","doi-asserted-by":"crossref","first-page":"883","DOI":"10.1111\/j.1574-6976.2010.00242.x","article-title":"The critical role of RNA processing and degradation in the control of gene expression","volume":"34","year":"2010","journal-title":"FEMS Microbiol. Rev."},{"key":"key\n\t\t\t\t20170508190032_B62","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1006\/jmbi.2000.3962","article-title":"Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E1","volume":"301","year":"2000","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20170508190032_B63","doi-asserted-by":"crossref","first-page":"1421","DOI":"10.1002\/j.1460-2075.1996.tb00484.x","article-title":"Defining the enzyme binding domain of a ribonuclease III processing signal. 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