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Intraspecific variability was hypothesized and projected for the selection of C. canephora plants able to maintain production in the context of global climate changes. For that, architectural, C-assimilation and biomass analyses were performed on 17-month-old Robusta (clones \u2018A1\u2019 and \u20183\u00a0V\u2019) and Conilon (clones \u201814\u2019 and \u201819\u2019) varieties grown in non-limiting soil, water and mineral nutrient conditions. Nondestructive coffee plant architecture coding, reconstruction and plant photosynthesis estimations were performed using a functional-structural plant modeling platform OpenAlea. 3D reconstructions and inclusion of parameters calculated and estimated from light response curves, such as dark respiration (Rd), maximum rate of carboxylation of RuBisCO and photosynthetic electron transport allowed the estimation of instantaneous and daily plant photosynthesis. The virtual orchard leaf area index was low, and light was not a limiting factor in early C. canephora development stages. Under such conditions, Robusta assimilated more CO2 at the plant and orchard scale and produced higher total biomass than Conilon. Lower plant daily photosynthesis and total biomass were correlated to higher Rd in Conilon than in Robusta. Among the architectural traits, leaf inclination, size and allometry were most highly correlated with plant assimilation and biomass. Relative allocation in leaf biomass was higher in \u201819\u2019 Conilon than in young Robusta plants, indicating intraspecific biomass partitioning. Similarly, variation in relative distribution of the root biomass and the root volume reflected clonal variation in soil occupation, indicating intraspecific variability in space occupation competitiveness. Coffea canephora denoted high root allocation in both Conilon and Robusta clones. However, relevant differences at subspecific levels were found, indicating the high potential of C. canephora to cope with drought events, which are expected to occur more frequently in the future, because of climate changes. The methodology developed here has the potential to be used for other crops and tree species.<\/jats:p><jats:p>Highlights Functional-structural plant model was used to estimate photosynthesis on a plant and daily scales in Coffea canephora (C. canephora). Among the architectural traits, leaf shape and inclination had the most impact on photosynthesis and biomass. Under non-limiting conditions, Robusta had higher plant photosynthesis and biomass than Conilon. A higher leaf biomass allocation in Conilon clone \u201819\u2019 than in Robusta suggested variety-specific partitioning. Variation in the relative distribution of the root biomass indicated C. canephora intraspecific soil occupation variability.<\/jats:p>","DOI":"10.1093\/treephys\/tpac138","type":"journal-article","created":{"date-parts":[[2022,12,12]],"date-time":"2022-12-12T23:06:05Z","timestamp":1670886365000},"page":"556-574","source":"Crossref","is-referenced-by-count":10,"title":["Correlating<i>Coffea canephora<\/i>3D architecture to plant photosynthesis at a daily scale and vegetative biomass allocation"],"prefix":"10.1093","volume":"43","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2068-8821","authenticated-orcid":false,"given":"Miroslava","family":"Rakocevic","sequence":"first","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]},{"given":"Danilo For\u00e7a","family":"Baroni","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]},{"given":"Guilherme Augusto Rodrigues","family":"de Souza","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]},{"given":"Wallace de Paula","family":"Bernado","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]},{"given":"Claudio Martins","family":"de Almeida","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]},{"given":"Fabio Takeshi","family":"Matsunaga","sequence":"additional","affiliation":[{"name":"Faculdade da Ind\u00fastria, SENAI , Rua Bel\u00e9m, 86026-040 Londrina, PR , Brazil"}]},{"given":"Weverton Pereira","family":"Rodrigues","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"},{"name":"Center of Agricultural, Natural and Literary Sciences, University of the State of Tocantins (UEMASUL) , Brejo do Pinto Ave., 65975-000 Estreito, MA , Brazil"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7639-7214","authenticated-orcid":false,"given":"Jos\u00e9 Cochicho","family":"Ramalho","sequence":"additional","affiliation":[{"name":"Plant Stress & Biodiversity Lab, Forest Research Center (CEF), School of Agriculture University of Lisbon (ISA\/ULisboa) , 2784-505 Oeiras , Portugal"},{"name":"GeoBioSciences, GeoTechnologies and GeoEngineering (GeoBioTec), Faculdade de Ci\u00eancias e Tecnologia, Universidade NOVA de Lisboa (FCT\/UNL) , 2829-516 Caparica , Portugal"}]},{"given":"Eliemar","family":"Campostrini","sequence":"additional","affiliation":[{"name":"Plant Physiology Laboratory (LMGV), State University of North Fluminense (UENF) , 2000 Alberto Lamego Ave., 28013-602 Campos dos Goytacazes, RJ , Brazil"}]}],"member":"286","published-online":{"date-parts":[[2022,12,15]]},"reference":[{"key":"2023041215390793000_","volume-title":"VegeSTAR: software qui calcule l\u2019interception lumineuse et la photosynth\u00e8se, version 3.2","author":"Adam","year":"2006"},{"key":"2023041215390793000_","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1093\/aob\/mcl260","article-title":"Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny","volume":"99","author":"Barth\u00e9l\u00e9my","year":"2007","journal-title":"Ann Bot"},{"key":"2023041215390793000_","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1093\/aob\/mcw143","article-title":"CN-wheat, a functional\u2013structural model of carbon and nitrogen metabolism in wheat culms after anthesis. 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