{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T04:41:10Z","timestamp":1769920870611,"version":"3.49.0"},"reference-count":86,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2020,12,31]],"date-time":"2020-12-31T00:00:00Z","timestamp":1609372800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/pages\/standard-publication-reuse-rights"}],"funder":[{"name":"Conservation of Freshwater Bivalves Project","award":["NORTE-01-0145-FEDER-030286"],"award-info":[{"award-number":["NORTE-01-0145-FEDER-030286"]}]},{"name":"Portuguese Foundation for Science and Technology","award":["SFRH\/BD\/137935\/2018"],"award-info":[{"award-number":["SFRH\/BD\/137935\/2018"]}]},{"name":"Portuguese Foundation for Science and Technology","award":["UID\/AGR\/04033\/2019"],"award-info":[{"award-number":["UID\/AGR\/04033\/2019"]}]},{"name":"Ministry of Science and Higher Education of Russia","award":["AAAA-A18-118012390161-9"],"award-info":[{"award-number":["AAAA-A18-118012390161-9"]}]},{"name":"Ministry of Science and Higher Education of Russia","award":["FSRU-2020-0007"],"award-info":[{"award-number":["FSRU-2020-0007"]}]},{"name":"Ministry of Science and Higher Education of Russia","award":["19-04-00066"],"award-info":[{"award-number":["19-04-00066"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,10,26]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>The Unionidae represent an excellent model taxon for unravelling the drivers of freshwater diversity, but, phylogeographic studies on Southeast Asian taxa are hampered by lack of a comprehensive phylogeny and mutation rates for this fauna. We present complete female- (F) and male-type (M) mitogenomes of four genera of the Southeast Asian clade Contradentini+Rectidentini. We calculate substitution rates for the mitogenome, the 13 protein-coding genes, the two ribosomal units and three commonly used fragments (co1, nd1 and 16S) of both F- and M-mtDNA, based on a fossil-calibrated, mitogenomic phylogeny of the Unionidae. Phylogenetic analyses, including an M+F concatenated dataset, consistently recovers a monophyletic Gonideinae. Subfamily-level topology is congruent with that of a previous nuclear genomic study and with patterns in mitochondrial gene order, suggesting Unionidae F-type 2 as a synapomorphy of the Gonideinae. Our phylogeny indicates that the clades Contradentini+Rectidentini and Lamprotulini+Pseudodontini+Gonideini split in the early Cretaceous (~125 Mya), and that the crown group of Contradentini+Rectidentini originated in the late Cretaceous (~79 Mya). Most gonideine tribes originated during the early Palaeogene. Substitution rates were comparable to those previously published for F-type co1 and 16S for certain Unionidae and Margaritiferidae species (pairs).<\/jats:p>","DOI":"10.1093\/zoolinnean\/zlaa153","type":"journal-article","created":{"date-parts":[[2020,10,21]],"date-time":"2020-10-21T19:12:08Z","timestamp":1603307528000},"page":"1088-1107","source":"Crossref","is-referenced-by-count":35,"title":["Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)"],"prefix":"10.1093","volume":"193","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0305-8270","authenticated-orcid":false,"given":"Alexandra","family":"Zieritz","sequence":"first","affiliation":[{"name":"School of Geography, Sir Clive Granger Building, University of Nottingham, University Park , Nottingham, UK"}]},{"given":"Elsa","family":"Froufe","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es , Av. General Norton de Matos s\/n, Matosinhos, Portugal"}]},{"given":"Ivan","family":"Bolotov","sequence":"additional","affiliation":[{"name":"Federal Center for Integrated Arctic Research, Russian Academy of Sciences , Severnaya Dvina Emb. 23, Arkhangelsk, Russian Federation"},{"name":"Northern Arctic Federal University , Northern Dvina Emb. 17, Arkhangelsk, Russian Federation"},{"name":"Saint-Petersburg State University , Universitetskaya Emb. 7\/9, Saint Petersburg, Russian Federation"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4299-0375","authenticated-orcid":false,"given":"Duarte V","family":"Gon\u00e7alves","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es , Av. General Norton de Matos s\/n, Matosinhos, Portugal"}]},{"given":"David C","family":"Aldridge","sequence":"additional","affiliation":[{"name":"Aquatic Ecology Group, The David Attenborough Building, Department of Zoology, University of Cambridge , Cambridge, UK"}]},{"given":"Arthur E","family":"Bogan","sequence":"additional","affiliation":[{"name":"Research Laboratory, North Carolina State Museum of Natural Sciences , Raleigh, NC, USA"}]},{"given":"Han Ming","family":"Gan","sequence":"additional","affiliation":[{"name":"Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University , Geelong,, VIC, Australia"}]},{"given":"Andr\u00e9","family":"Gomes-Dos-Santos","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es , Av. General Norton de Matos s\/n, Matosinhos, Portugal"},{"name":"Department of Biology, Faculty of Sciences, University of Porto , Rua do Campo Alegre s\/n, Porto, Portugal"}]},{"given":"Ronaldo","family":"Sousa","sequence":"additional","affiliation":[{"name":"CBMA - Centre of Molecular and Environmental Biology, Department of Biology, University of Minho , Campos de Gualtar, Braga, Portugal"}]},{"given":"Amilcar","family":"Teixeira","sequence":"additional","affiliation":[{"name":"Centro de Investiga\u00e7\u00e3o de Montanha (CIMO), Instituto Polit\u00e9cnico de Bragan\u00e7a , Campus de Santa Apol\u00f3nia, Bragan\u00e7a, Portugal"}]},{"given":"Simone","family":"Varandas","sequence":"additional","affiliation":[{"name":"CITAB-UTAD \u2013 Centre for Research and Technology of Agro-Environment and Biological Sciences, University of Tr\u00e1s-os-Montes and Alto Douro , Apartado 1013, Vila Real, Portugal"}]},{"given":"David","family":"Zanatta","sequence":"additional","affiliation":[{"name":"Biology Department, Institute for Great Lakes Research, Central Michigan University , Biosciences, Mount Pleasant, MI, USA"}]},{"given":"Manuel","family":"Lopes-Lima","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es , Av. General Norton de Matos s\/n, Matosinhos, Portugal"},{"name":"CIBIO\/InBIO - Research Center in Biodiversity and Genetic Resources, Universidade do Porto , Campus Agr\u00e1rio de Vair\u00e3o, Rua Padre Armando Quintas, Vair\u00e3o, Portugal"}]}],"member":"286","published-online":{"date-parts":[[2020,12,31]]},"reference":[{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"11199","DOI":"10.1038\/s41598-018-29451-1","article-title":"Species richness, molecular taxonomy and biogeography of the radicine pond snails (Gastropoda: Lymnaeidae) in the Old World","volume":"8","author":"Aksenova","year":"2018","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","first-page":"277","article-title":"Potomida littoralis (Bivalvia, Unionidae) evolutionary history: slow evolution or recent speciation?","volume":"179","author":"Araujo","year":"2016","journal-title":"Zoological Journal of the Linnean Society"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"570","DOI":"10.1126\/science.1122033","article-title":"Population size does not influence mitochondrial genetic diversity in animals","volume":"312","author":"Bazin","year":"2006","journal-title":"Science"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1016\/j.ympev.2012.10.020","article-title":"Genetic aspects of mitochondrial genome evolution","volume":"69","author":"Bernt","year":"2013","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/j.ympev.2012.08.023","article-title":"MITOS: improved de novo metazoan mitochondrial genome annotation","volume":"69","author":"Bernt","year":"2013","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1093\/genetics\/103.3.513","article-title":"An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results","volume":"103","author":"Birky","year":"1983","journal-title":"Genetics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"2135","DOI":"10.1038\/s41598-017-02312-z","article-title":"Ancient river inference explains exceptional oriental freshwater mussel radiations","volume":"7","author":"Bolotov","year":"2017","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"6616","DOI":"10.1038\/s41598-020-63612-5","article-title":"New freshwater mussel taxa discoveries clarify biogeographic division of Southeast Asia","volume":"10","author":"Bolotov","year":"2020","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1016\/j.ympev.2016.07.020","article-title":"Multi-locus fossil-calibrated phylogeny, biogeography and a subgeneric revision of the Margaritiferidae (Mollusca: Bivalvia: Unionoida)","volume":"103","author":"Bolotov","year":"2016","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"11573","DOI":"10.1038\/s41598-017-11957-9","article-title":"New taxa of freshwater mussels (Unionidae) from a species-rich but overlooked evolutionary hotspot in Southeast Asia","volume":"7","author":"Bolotov","year":"2017","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"e905481","DOI":"10.1080\/02724634.2014.905481","article-title":"A new dermatemydid (Testudines, Kinosternoidea) from the Paleocene-Eocene Thermal Maximum, Willwood Formation, southeastern Bighorn Basin, Wyoming","volume":"35","author":"Bourque","year":"2015","journal-title":"Journal of Vertebrate Paleontology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1016\/j.tig.2007.05.011","article-title":"The unusual system of doubly uniparental inheritance of mtDNA: isn\u2019t one enough?","volume":"23","author":"Breton","year":"2007","journal-title":"Trends in Genetics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1575","DOI":"10.1534\/genetics.109.110700","article-title":"Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication","volume":"183","author":"Breton","year":"2009","journal-title":"Genetics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1007\/978-1-4684-4988-4_2","article-title":"The mitochondrial genome of animals","volume-title":"Molecular evolutionary genetics","author":"Brown","year":"1985"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1967","DOI":"10.1073\/pnas.76.4.1967","article-title":"Rapid evolution of animal mitochondrial DNA","volume":"76","author":"Brown","year":"1979","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1016\/j.palaeo.2012.09.008","article-title":"Northward range extension of a diminutive-sized mammal (Ectocion parvus) and the implication of body size change during the Paleocene\u2013Eocene Thermal Maximum","volume":"363","author":"Burger","year":"2012","journal-title":"Palaeogeography, Palaeoclimatology, Palaeoecology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1016\/j.ympev.2016.12.007","article-title":"The complete maternal and paternal mitochondrial genomes of Unio crassus: mitochondrial molecular clock and the overconfidence of molecular dating","volume":"107","author":"Burzy\u0144ski","year":"2017","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1016\/j.gloplacha.2017.07.014","article-title":"Hydrological and associated biogeochemical consequences of rapid global warming during the Paleocene-Eocene thermal maximum","volume":"157","author":"Carmichael","year":"2017","journal-title":"Global and Planetary Change"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1067","DOI":"10.1093\/gbe\/evr040","article-title":"Evolutionary patterns of the mitochondrial genome in Metazoa: exploring the role of mutation and selection in mitochondrial protein coding genes","volume":"3","author":"Castellana","year":"2011","journal-title":"Genome Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1186\/1471-2148-8-165","article-title":"Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochrome c oxidase subunit II protein in freshwater mussels: evidence for an elevated amino acid substitution rate in the face of domain-specific purifying selection","volume":"8","author":"Chapman","year":"2008","journal-title":"BMC Evolutionary Biology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"6023","DOI":"10.1002\/ece3.2319","article-title":"Genetic diversity and evolutionary history of the Schizothorax species complex in the Lancang River (upper Mekong)","volume":"6","author":"Chen","year":"2016","journal-title":"Ecology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"861","DOI":"10.1093\/bioinformatics\/btm598","article-title":"GenomeVx: simple web-based creation of editable circular chromosome maps","volume":"24","author":"Conant","year":"2008","journal-title":"Bioinformatics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1007\/s00239-005-0110-7","article-title":"Molecular evolution of cytochrome c oxidase in high-performance fish (Teleostei: Scombroidei)","volume":"62","author":"Dalziel","year":"2006","journal-title":"Journal of Molecular Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1007\/BF02111289","article-title":"Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila","volume":"26","author":"DeSalle","year":"1987","journal-title":"Journal of Molecular Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"20160020","DOI":"10.1098\/rstb.2016.0020","article-title":"The evolution of methods for establishing evolutionary timescales","volume":"371","author":"Donoghue","year":"2016","journal-title":"Philosophical Transactions of the Royal Society B: Biological Sciences"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1017\/S1464793105006950","article-title":"Freshwater biodiversity: importance, status, and conservation challenges","volume":"81","author":"Dudgeon","year":"2006","journal-title":"Biological Reviews"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"574","DOI":"10.3732\/ajb.1200397","article-title":"Winged fruits and associated leaves of Shorea (Dipterocarpaceae) from the Late Eocene of South China and their phytogeographic and paleoclimatic implications","volume":"100","author":"Feng","year":"2013","journal-title":"American Journal of Botany"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2164-9-119","article-title":"The adaptive evolution of the mammalian mitochondrial genome","volume":"9","author":"da Fonseca","year":"2008","journal-title":"BMC Genomics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1038\/s41437-019-0242-y","article-title":"Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution","volume":"124","author":"Froufe","year":"2020","journal-title":"Heredity"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1007\/s13127-016-0262-x","article-title":"Who lives where? Molecular and morphometric analyses clarify which Unio species (Unionida, Mollusca) inhabit the southwestern Palearctic region","volume":"16","author":"Froufe","year":"2016","journal-title":"Organisms Diversity and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"750","DOI":"10.1016\/j.scitotenv.2018.04.056","article-title":"Current and future effects of global change on a hotspot\u2019s freshwater diversity","volume":"635","author":"Gallardo","year":"2018","journal-title":"The Science of the Total Environment"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1016\/j.tree.2006.03.006","article-title":"Environment and evolution through the Paleocene\u2013Eocene thermal maximum","volume":"21","author":"Gingerich","year":"2006","journal-title":"Trends in Ecology & Evolution"},{"key":"2023031717364316500_","article-title":"The freshwater mussels (Unionoida) of the world (and other less consequential bivalves)","volume-title":"MUSSEL Project Web Site.","author":"Graf","year":"2019"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.ympev.2015.01.012","article-title":"Molecular phylogenetic analysis supports a Gondwanan origin of the Hyriidae (Mollusca: Bivalvia: Unionida) and the paraphyly of Australasian taxa","volume":"85","author":"Graf","year":"2015","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"e2760","DOI":"10.7717\/peerj.2760","article-title":"Pursuing the quest for better understanding the taxonomic distribution of the system of doubly uniparental inheritance of mtDNA","volume":"4","author":"Gusman","year":"2016","journal-title":"PeerJ"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"e129","DOI":"10.1093\/nar\/gkt371","article-title":"Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads\u2013a baiting and iterative mapping approach","volume":"41","author":"Hahn","year":"2013","journal-title":"Nucleic Acids Research"},{"key":"2023031717364316500_","first-page":"2252","article-title":"High fidelity of mitochondrial genome transmission under the doubly uniparental mode of inheritance in freshwater mussels (Bivalvia: Unionoidea)","volume":"56","author":"Hoeh","year":"2002","journal-title":"Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1016\/j.ympev.2018.09.019","article-title":"Towards a global phylogeny of freshwater mussels (Bivalvia: Unionida): species delimitation of Chinese taxa, mitochondrial phylogenomics, and diversification patterns","volume":"130","author":"Huang","year":"2019","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1016\/j.ympev.2015.11.008","article-title":"Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.)","volume":"95","author":"Jacobsen","year":"2016","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1016\/j.ympev.2005.12.008","article-title":"Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri-Tyrrhenian area","volume":"39","author":"Ketmaier","year":"2006","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"170","DOI":"10.1007\/BF02100115","article-title":"Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea","volume":"29","author":"Kishino","year":"1989","journal-title":"Journal of Molecular Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"4106","DOI":"10.1038\/s41598-019-39365-1","article-title":"A new genus and two new species of freshwater mussels (Unionidae) from western Indochina","volume":"9","author":"Konopleva","year":"2019","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: molecular evolutionary genetics analysis across computing platforms","volume":"35","author":"Kumar","year":"2018","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","first-page":"772","article-title":"PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses","volume":"34","author":"Lanfear","year":"2017","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1093\/bioinformatics\/btm573","article-title":"ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences","volume":"24","author":"Laslett","year":"2008","journal-title":"Bioinformatics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"952","DOI":"10.2307\/2410870","article-title":"Paternal mitochondrial DNA differentiation far exceeds maternal mitochondrial DNA and allozyme differentiation in the freshwater mussel, Anodonta grandis grandis","volume":"50","author":"Liu","year":"1996","journal-title":"Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s10750-017-3486-7","article-title":"Conservation of freshwater bivalves at the global scale: diversity, threats and research needs","volume":"810","author":"Lopes-Lima","year":"2018","journal-title":"Hydrobiologia"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1093\/mollus\/eyx009","article-title":"The first Margaritiferidae male (M-Type) mitogenome: mitochondrial gene order as a potential character for determining higher-order phylogeny within Unionida (Bivalvia)","volume":"83","author":"Lopes-Lima","year":"2017","journal-title":"Journal of Molluscan Studies"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1016\/j.ympev.2016.08.021","article-title":"Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): defining modern subfamilies and tribes","volume":"106","author":"Lopes-Lima","year":"2017","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"106755","DOI":"10.1016\/j.ympev.2020.106755","article-title":"Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution","volume":"146","author":"Lopes-Lima","year":"2020","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1593","DOI":"10.1098\/rstb.1996.0143","article-title":"Molecular systematics and evolution of reproductive traits of North American freshwater unionacean mussels (Mollusca: Bivalvia) as inferred from 16S rRNA gene sequences","volume":"351","author":"Lydeard","year":"1996","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"2005","DOI":"10.1093\/oxfordjournals.molbev.a004024","article-title":"Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the isthmus of Panama","volume":"19","author":"Marko","year":"2002","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1109\/GCE.2010.5676129","article-title":"Creating the CIPRES Science Gateway for inference of large phylogenetic trees","volume-title":"2010 Gateway Computing Environments Workshop (GCE)","author":"Miller","year":"2010"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/978-3-642-20992-5_1","article-title":"Global biodiversity conservation: the critical role of hotspots","volume-title":"Biodiversity hotspots","author":"Mittermeier","year":"2011"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"766","DOI":"10.1038\/s41561-018-0199-0","article-title":"High temperatures in the terrestrial mid-latitudes during the early Palaeogene","volume":"11","author":"Naafs","year":"2018","journal-title":"Nature Geoscience"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"2167","DOI":"10.1093\/molbev\/msn159","article-title":"Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp Nasonia (Hymenoptera: Pteromalidae)","volume":"25","author":"Oliveira","year":"2008","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1509","DOI":"10.1098\/rstb.2004.1536","article-title":"Metacommunity process rather than continental tectonic history better explains geographically structured phylogenies in legumes","volume":"359","author":"Pennington","year":"2004","journal-title":"Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1007\/BF01215182","article-title":"Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes","volume":"41","author":"Perna","year":"1995","journal-title":"Journal of Molecular Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1016\/j.ympev.2019.02.016","article-title":"Unioverse: a phylogenomic resource for reconstructing the evolution of freshwater mussels (Bivalvia, Unionoida)","volume":"137","author":"Pfeiffer","year":"2019","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1111\/zoj.12282","article-title":"Evolution of bilaterally asymmetrical larvae in freshwater mussels (Bivalvia: Unionoida: Unionidae)","volume":"175","author":"Pfeiffer","year":"2015","journal-title":"Zoological Journal of the Linnean Society"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1093\/sysbio\/syy032","article-title":"Posterior summarization in Bayesian phylogenetics using Tracer 1.7","volume":"67","author":"Rambaut","year":"2018","journal-title":"Systematic Biology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1111\/brv.12480","article-title":"Emerging threats and persistent conservation challenges for freshwater biodiversity","volume":"94","author":"Reid","year":"2019","journal-title":"Biological Reviews of the Cambridge Philosophical Society"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1093\/sysbio\/sys029","article-title":"MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space","volume":"61","author":"Ronquist","year":"2012","journal-title":"Systematic Biology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"e105564","DOI":"10.1371\/journal.pone.0105564","article-title":"Molecular phylogeny and biogeographic history of the armored neotropical catfish subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae (Siluriformes: Loricariidae)","volume":"9","author":"Roxo","year":"2014","journal-title":"PLoS One"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"3299","DOI":"10.1093\/molbev\/msx248","article-title":"DnaSP 6: DNA sequence polymorphism analysis of large data sets","volume":"34","author":"Rozas","year":"2017","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","volume-title":"Molecular cloning: a laboratory manual","author":"Sambrook","year":"1989"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"W7","DOI":"10.1093\/nar\/gkv318","article-title":"GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters","volume":"43","author":"Sela","year":"2015","journal-title":"Nucleic Acids Research"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1080\/10635150290069913","article-title":"An approximately unbiased test of phylogenetic tree selection","volume":"51","author":"Shimodaira","year":"2002","journal-title":"Systematic Biology"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1093\/oxfordjournals.molbev.a026201","article-title":"Multiple comparisons of log-likelihoods with applications to phylogenetic inference","volume":"16","author":"Shimodaira","year":"1999","journal-title":"Molecular Biology and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1007\/s00239-010-9393-4","article-title":"Comparative genomics of marine mussels (Mytilus spp.) gender associated mtDNA: rapidly evolving atp8","volume":"71","author":"\u015amietanka","year":"2010","journal-title":"Journal of Molecular Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1223","DOI":"10.1073\/pnas.0511296103","article-title":"Rapid Asia\u2013Europe\u2013North America geographic dispersal of earliest Eocene primate Teilhardina during the Paleocene\u2013Eocene thermal maximum","volume":"103","author":"Smith","year":"2006","journal-title":"Proceedings of the National Academy of Sciences of the USA"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","author":"Stamatakis","year":"2014","journal-title":"Bioinformatics"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1006\/mpev.1999.0666","article-title":"Diagnostic genetic markers and evolutionary relationships among invasive dreissenoid and corbiculoid bivalves in North America: phylogenetic signal from mitochondrial 16S rDNA","volume":"13","author":"Stepien","year":"1999","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"vey016","DOI":"10.1093\/ve\/vey016","article-title":"Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10","volume":"4","author":"Suchard","year":"2018","journal-title":"Virus Evolution"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"10628","DOI":"10.1038\/s41598-017-11117-z","article-title":"Limited locomotive ability relaxed selective constraints on molluscs mitochondrial genomes","volume":"7","author":"Sun","year":"2017","journal-title":"Scientific Reports"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1007\/978-3-642-56869-5_6","article-title":"Larval types and early postlarval biology in naiads (Unionoida)","volume-title":"Ecology and evolution of the freshwater mussels Unionoida","author":"W\u00e4chtler","year":"2001"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"25","DOI":"10.4003\/006.027.0203","article-title":"As time goes by: a simple fool\u2019s guide to molecular clock approaches in invertebrates","volume":"27","author":"Wilke","year":"2009","journal-title":"American Malacological Bulletin"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1234","DOI":"10.3732\/ajb.1200554","article-title":"Plant response to a global greenhouse event 56 million years ago","volume":"100","author":"Wing","year":"2013","journal-title":"American Journal of Botany"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"993","DOI":"10.1126\/science.1116913","article-title":"Transient floral change and rapid global warming at the Paleocene-Eocene boundary","volume":"310","author":"Wing","year":"2005","journal-title":"Science"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1007\/s10750-017-3104-8","article-title":"Diversity, biogeography and conservation of freshwater mussels (Bivalvia: Unionida) in East and Southeast Asia","volume":"810","author":"Zieritz","year":"2018","journal-title":"Hydrobiologia"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1016\/j.biocon.2018.01.012","article-title":"Changes and drivers of freshwater mussel diversity and distribution in northern Borneo","volume":"219","author":"Zieritz","year":"2018","journal-title":"Biological Conservation"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1016\/j.scitotenv.2016.07.098","article-title":"Factors driving changes in freshwater mussel (Bivalvia, Unionida) diversity and distribution in Peninsular Malaysia","volume":"571","author":"Zieritz","year":"2016","journal-title":"The Science of the Total Environment"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"2235","DOI":"10.1007\/s10531-020-01971-1","article-title":"Towards the conservation of Borneo\u2019s freshwater mussels: rediscovery of the endemic Ctenodesma borneensis and first record of the non-native Sinanodonta lauta","volume":"29","author":"Zieritz","year":"2020","journal-title":"Biodiversity and Conservation"},{"key":"2023031717364316500_","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s11692-012-9195-2","article-title":"Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA","volume":"40","author":"Zouros","year":"2013","journal-title":"Evolutionary Biology"}],"container-title":["Zoological Journal of the Linnean Society"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/zoolinnean\/article-pdf\/193\/3\/1088\/49553886\/zlaa153.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/zoolinnean\/article-pdf\/193\/3\/1088\/49553886\/zlaa153.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,10]],"date-time":"2023-10-10T08:39:19Z","timestamp":1696927159000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/zoolinnean\/article\/193\/3\/1088\/6056018"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,12,31]]},"references-count":86,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2020,12,31]]},"published-print":{"date-parts":[[2021,10,26]]}},"URL":"https:\/\/doi.org\/10.1093\/zoolinnean\/zlaa153","relation":{},"ISSN":["0024-4082","1096-3642"],"issn-type":[{"value":"0024-4082","type":"print"},{"value":"1096-3642","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2021,11,1]]},"published":{"date-parts":[[2020,12,31]]}}}