{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T14:46:54Z","timestamp":1790866014290,"version":"4.1.0"},"reference-count":13,"publisher":"Ovid Technologies (Wolters Kluwer Health)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,5,15]]},"DOI":"10.1097\/qad.0b013e3283467020","type":"journal-article","created":{"date-parts":[[2011,4,19]],"date-time":"2011-04-19T06:34:18Z","timestamp":1303194858000},"page":"1035-1039","source":"Crossref","is-referenced-by-count":17,"title":["Time-measured phylogenies of gag, pol and env sequence data reveal the direction and time interval of HIV-1 transmission"],"prefix":"10.1097","volume":"25","author":[{"given":"Andrea","family":"Rachinger","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paul HP","family":"Groeneveld","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sander","family":"van Assen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Lemey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanneke","family":"Schuitemaker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"276","reference":[{"key":"R1-3-20210130","doi-asserted-by":"crossref","first-page":"e86","DOI":"10.1086\/592978","article-title":"Recovery of viremic control after superinfection with pathogenic HIV type 1 in a long-term elite controller of HIV type 1 infection","volume":"47","author":"Rachinger","year":"2008","journal-title":"Clin Infect Dis"},{"key":"R2-3-20210130","doi-asserted-by":"crossref","first-page":"10864","DOI":"10.1073\/pnas.93.20.10864","article-title":"Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis","volume":"93","author":"Leitner","year":"1996","journal-title":"Proc Natl Acad Sci U S A"},{"key":"R3-3-20210130","doi-asserted-by":"crossref","first-page":"11981","DOI":"10.1128\/JVI.79.18.11981-11989.2005","article-title":"Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain","volume":"79","author":"Lemey","year":"2005","journal-title":"J Virol"},{"key":"R4-3-20210130","doi-asserted-by":"crossref","first-page":"5918","DOI":"10.1128\/JVI.68.9.5918-5924.1994","article-title":"Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes","volume":"68","author":"Albert","year":"1994","journal-title":"J Virol"},{"key":"R5-3-20210130","doi-asserted-by":"crossref","first-page":"1649","DOI":"10.1097\/01.aids.0000187904.02261.1a","article-title":"Molecular testing of multiple HIV-1 transmissions in a criminal case","volume":"19","author":"Lemey","year":"2005","journal-title":"AIDS"},{"key":"R6-3-20210130","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1097\/01.aids.0000182519.92030.ce","article-title":"Exploring full-genome sequences for phylogenetic support of HIV-1 transmission events","volume":"19","author":"Lemey","year":"2005","journal-title":"AIDS"},{"key":"R7-3-20210130","doi-asserted-by":"crossref","first-page":"382","DOI":"10.1111\/j.1468-1293.2007.00486.x","article-title":"HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission","volume":"8","author":"Bernard","year":"2007","journal-title":"HIV Med"},{"key":"R8-3-20210130","doi-asserted-by":"crossref","first-page":"e88","DOI":"10.1371\/journal.pbio.0040088","article-title":"Relaxed phylogenetics and dating with confidence","volume":"4","author":"Drummond","year":"2006","journal-title":"PLoS Biol"},{"key":"R9-3-20210130","doi-asserted-by":"crossref","first-page":"836","DOI":"10.1038\/444836a","article-title":"Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak","volume":"444","author":"De Oliveira","year":"2006","journal-title":"Nature"},{"key":"R10-3-20210130","doi-asserted-by":"crossref","first-page":"1309","DOI":"10.1086\/651687","article-title":"Absence of HIV-1 superinfection 1 year after infection between 1985 and 1997 coincides with a reduction in sexual risk behavior in the seroincident Amsterdam cohort of homosexual men","volume":"50","author":"Rachinger","year":"2010","journal-title":"Clin Infect Dis"},{"key":"R11-3-20210130","doi-asserted-by":"crossref","first-page":"2665","DOI":"10.1534\/genetics.105.048975","article-title":"A simple and robust statistical test for detecting the presence of recombination","volume":"172","author":"Bruen","year":"2006","journal-title":"Genetics"},{"key":"R12-3-20210130","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1186\/1471-2148-7-214","article-title":"BEAST: Bayesian evolutionary analysis by sampling trees","volume":"7","author":"Drummond","year":"2007","journal-title":"BMC Evol Biol"},{"key":"R13-3-20210130","doi-asserted-by":"crossref","first-page":"665","DOI":"10.1080\/10635150390235485","article-title":"Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics","volume":"52","author":"Erixon","year":"2003","journal-title":"Syst Biol"}],"container-title":["AIDS"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.ovid.com\/00002030-201105150-00003","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,6]],"date-time":"2026-08-06T19:23:36Z","timestamp":1786044216000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.ovid.com\/00002030-201105150-00003"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,15]]},"references-count":13,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2011]]}},"URL":"https:\/\/doi.org\/10.1097\/qad.0b013e3283467020","relation":{},"ISSN":["0269-9370"],"issn-type":[{"value":"0269-9370","type":"print"}],"subject":[],"published":{"date-parts":[[2011,5,15]]}}}