{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T21:02:32Z","timestamp":1789506152814,"version":"build-2803163510"},"reference-count":37,"publisher":"Microbiology Society","issue":"Pt_7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,7,1]]},"abstract":"A single strain, NR06T<\/jats:sup>, was isolated from the intestine of a TNFdeltaARE<\/jats:sup> mouse. Based on phylogenetic analysis of partial 16S rRNA gene sequences, strain NR06T<\/jats:sup> belongs in the family \n \n Coriobacteriaceae<\/jats:italic>\n <\/jats:ext-link>\n <\/jats:named-content> within the \n \n Actinobacteria<\/jats:italic>\n <\/jats:ext-link>\n <\/jats:named-content>. The most closely related species with validly published names are members of the genera \n \n Adlercreutzia<\/jats:italic>\n <\/jats:ext-link>\n <\/jats:named-content>, \n \n Asaccharobacter<\/jats:italic>\n <\/jats:ext-link>\n <\/jats:named-content> and \n \n Enterorhabdus<\/jats:italic>\n <\/jats:ext-link>\n <\/jats:named-content> (<96\u200a% sequence similarity). Strain NR06T<\/jats:sup> was characterized by a high prevalence of monomethylmenaquinone-6 (MMK-6; 76\u200a%) and the presence of meso<\/jats:italic>-diaminopimelic acid in the cell wall. One of the major cellular fatty acids of strain NR06T<\/jats:sup> was C15\u200a:\u200a0<\/jats:sub> ISO. Glucose was detected as a whole cell sugar. Strain NR06T<\/jats:sup> was resistant to the antibiotic colistin and was positive for arginine and leucine arylamidase activity. Based on these characteristics, strain NR06T<\/jats:sup> differed from related described bacteria. Therefore, the name Parvibacter caecicola<\/jats:italic> gen. nov., sp. nov. is proposed to accommodate the novel bacterium. The type strain of the type species is NR06T<\/jats:sup> (\u200a=\u200aDSM 22242T<\/jats:sup>\u200a=\u200aCCUG 57646T<\/jats:sup>).<\/jats:p>","DOI":"10.1099\/ijs.0.045344-0","type":"journal-article","created":{"date-parts":[[2013,1,5]],"date-time":"2013-01-05T06:40:32Z","timestamp":1357368032000},"page":"2642-2648","source":"Crossref","is-referenced-by-count":36,"title":["Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family \n \n Coriobacteriaceae\n \n isolated from the caecum of a mouse"],"prefix":"10.1099","volume":"63","author":[{"given":"Thomas","family":"Clavel","sequence":"first","affiliation":[{"name":"Biofunctionality Unit, ZIEL - Research Center for Nutrition and Food Sciences, TU M\u00fcnchen, Freising-Weihenstephan, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C\u00e9dric","family":"Charrier","sequence":"additional","affiliation":[{"name":"NovaBiotics Ltd, Aberdeen, AB21 9TR, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mareike","family":"Wenning","sequence":"additional","affiliation":[{"name":"Microbiology Unit, ZIEL - Research Center for Nutrition and Food Sciences, TU M\u00fcnchen, Freising-Weihenstephan, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dirk","family":"Haller","sequence":"additional","affiliation":[{"name":"Biofunctionality Unit, ZIEL - Research Center for Nutrition and Food Sciences, TU M\u00fcnchen, Freising-Weihenstephan, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"345","reference":[{"key":"r1","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1007\/s00792-009-0261-3","article-title":"Cultivating the uncultured: limits, advances and future challenges","volume":"13","author":"Alain","year":"2009","journal-title":"Extremophiles"},{"key":"r2","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J Mol Biol"},{"key":"r3","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1128\/AEM.18.4.558-561.1969","article-title":"Combined screw-cap and rubber-stopper closure for Hungate tubes (pre-reduced anaerobically sterilized roll tubes and liquid media)","volume":"18","author":"Attebery","year":"1969","journal-title":"Appl Microbiol"},{"key":"r4","doi-asserted-by":"crossref","first-page":"1915","DOI":"10.1126\/science.1104816","article-title":"Host-bacterial mutualism in the human intestine","volume":"307","author":"B\u00e4ckhed","year":"2005","journal-title":"Science"},{"key":"r5","doi-asserted-by":"crossref","first-page":"18933","DOI":"10.1073\/pnas.1007028107","article-title":"Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors","volume":"107","author":"Benson","year":"2010","journal-title":"Proc Natl Acad Sci U S A"},{"key":"r6","doi-asserted-by":"crossref","first-page":"911","DOI":"10.1139\/o59-099","article-title":"A rapid method of total lipid extraction and purification","volume":"37","author":"Bligh","year":"1959","journal-title":"Can J Biochem Physiol"},{"key":"r7","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1016\/0003-2697(77)90720-5","article-title":"A rapid method for the base ratio determination of bacterial DNA","volume":"81","author":"Cashion","year":"1977","journal-title":"Anal Biochem"},{"key":"r8","doi-asserted-by":"crossref","first-page":"e00271-10","DOI":"10.1128\/mBio.00271-10","article-title":"Colonization-induced host-gut microbial metabolic interaction","volume":"2","author":"Claus","year":"2011","journal-title":"mBio"},{"key":"r9","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.syapm.2006.02.003","article-title":"Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside","volume":"30","author":"Clavel","year":"2007","journal-title":"Syst Appl Microbiol"},{"key":"r10","doi-asserted-by":"crossref","first-page":"1805","DOI":"10.1099\/ijs.0.003087-0","article-title":"Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov","volume":"59","author":"Clavel","year":"2009","journal-title":"Int J Syst Evol Microbiol"},{"key":"r11","doi-asserted-by":"crossref","first-page":"1527","DOI":"10.1099\/ijs.0.015016-0","article-title":"Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009","volume":"60","author":"Clavel","year":"2010","journal-title":"Int J Syst Evol Microbiol"},{"key":"r12","doi-asserted-by":"crossref","first-page":"5069","DOI":"10.1128\/AEM.03006-05","article-title":"Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with arb","volume":"72","author":"DeSantis","year":"2006a","journal-title":"Appl Environ Microbiol"},{"key":"r13","doi-asserted-by":"crossref","first-page":"W394","DOI":"10.1093\/nar\/gkl244","article-title":"nast: a multiple sequence alignment server for comparative analysis of 16S rRNA genes","volume":"34","author":"DeSantis","year":"2006b","journal-title":"Nucleic Acids Res"},{"key":"r14","doi-asserted-by":"crossref","first-page":"6252","DOI":"10.1073\/pnas.1102938108","article-title":"Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice","volume":"108","author":"Goodman","year":"2011","journal-title":"Proc Natl Acad Sci U S A"},{"key":"r15","first-page":"95","article-title":"BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT","volume":"41","author":"Hall","year":"1999","journal-title":"Nucleic Acids Symp Ser"},{"key":"r16","doi-asserted-by":"crossref","first-page":"1725","DOI":"10.1099\/00207713-49-4-1725","article-title":"Phylogenetic evidence for the transfer of Eubacterium lentum to the genus Eggerthella as Eggerthella lenta gen. nov., comb. nov","volume":"49","author":"Kageyama","year":"1999","journal-title":"Int J Syst Bacteriol"},{"key":"r17","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1053\/j.gastro.2007.04.005","article-title":"The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects","volume":"133","author":"Kassinen","year":"2007","journal-title":"Gastroenterology"},{"key":"r18","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1016\/j.diagmicrobio.2004.04.012","article-title":"Eggerthella hongkongensis sp. nov. and Eggerthella sinensis sp. nov., two novel Eggerthella species, account for half of the cases of Eggerthella bacteremia","volume":"49","author":"Lau","year":"2004","journal-title":"Diagn Microbiol Infect Dis"},{"key":"r19","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1136\/gutjnl-2011-301805","article-title":"A metagenomic insight into our gut's microbiome","volume":"62","author":"Lepage","year":"2013","journal-title":"Gut"},{"key":"r20","doi-asserted-by":"crossref","first-page":"1221","DOI":"10.1099\/ijs.0.65404-0","article-title":"Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella","volume":"58","author":"Maruo","year":"2008","journal-title":"Int J Syst Evol Microbiol"},{"key":"r21","doi-asserted-by":"crossref","first-page":"40","DOI":"10.3945\/jn.111.148247","article-title":"Daidzein and genistein are converted to equol and 5-hydroxy-equol by human intestinal Slackia isoflavoniconvertens in gnotobiotic rats","volume":"142","author":"Matthies","year":"2012","journal-title":"J Nutr"},{"key":"r22","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1099\/00207713-39-2-159","article-title":"Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography","volume":"39","author":"Mesbah","year":"1989","journal-title":"Int J Syst Bacteriol"},{"key":"r23","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.1099\/ijs.0.64894-0","article-title":"Asaccharobacter celatus gen. nov., sp. nov., isolated from rat caecum","volume":"58","author":"Minamida","year":"2008","journal-title":"Int J Syst Evol Microbiol"},{"key":"r24","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nature08821","article-title":"A human gut microbial gene catalogue established by metagenomic sequencing","volume":"464","author":"Qin","year":"2010","journal-title":"Nature"},{"key":"r25","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1194\/jlr.R500013-JLR200","article-title":"Bile salt biotransformations by human intestinal bacteria","volume":"47","author":"Ridlon","year":"2006","journal-title":"J Lipid Res"},{"key":"r26","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1111\/j.1574-6941.2007.00331.x","article-title":"The plate debate: cultivable communities have no utility in contemporary environmental microbial ecology","volume":"60","author":"Ritz","year":"2007","journal-title":"FEMS Microbiol Ecol"},{"key":"r27","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/S0168-6445(00)00040-1","article-title":"The species concept for prokaryotes","volume":"25","author":"Rossell\u00f3-Mora","year":"2001","journal-title":"FEMS Microbiol Rev"},{"key":"r28","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou","year":"1987","journal-title":"Mol Biol Evol"},{"key":"r29","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1111\/j.1462-2920.2004.00617.x","article-title":"Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins","volume":"6","author":"Santos","year":"2004","journal-title":"Environ Microbiol"},{"key":"r30","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1111\/j.1574-6968.1984.tb01388.x","article-title":"Determination of DNA base composition by reversed-phase high-performance liquid chromatography","volume":"25","author":"Tamaoka","year":"1984","journal-title":"FEMS Microbiol Lett"},{"key":"r31","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","article-title":"mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods","volume":"28","author":"Tamura","year":"2011","journal-title":"Mol Biol Evol"},{"key":"r32","first-page":"330","article-title":"Phenotypic characterization and the principles of comparative systematics","volume-title":"Methods for General and Molecular Microbiology","author":"Tindall","year":"2007"},{"key":"r33","doi-asserted-by":"crossref","first-page":"1027","DOI":"10.1038\/nature05414","article-title":"An obesity-associated gut microbiome with increased capacity for energy harvest","volume":"444","author":"Turnbaugh","year":"2006","journal-title":"Nature"},{"key":"r34","first-page":"71","article-title":"Infrared spectroscopy in the identification of microorganisms","volume-title":"Vibrational spectroscopy for medical diagnosis","author":"Wenning","year":"2008"},{"key":"r35","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1136\/gut.2010.216929","article-title":"Depletion of luminal iron alters the gut microbiota and prevents Crohn\u2019s disease-like ileitis","volume":"60","author":"Werner","year":"2011","journal-title":"Gut"},{"key":"r36","doi-asserted-by":"crossref","first-page":"1405","DOI":"10.1099\/ijs.0.005900-0","article-title":"Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn\u2019s disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov","volume":"59","author":"W\u00fcrdemann","year":"2009","journal-title":"Int J Syst Evol Microbiol"},{"key":"r37","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/j.syapm.2008.07.001","article-title":"The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains","volume":"31","author":"Yarza","year":"2008","journal-title":"Syst Appl Microbiol"}],"container-title":["International Journal of Systematic and Evolutionary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijs.0.045344-0?crawler=true","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,28]],"date-time":"2020-08-28T15:33:20Z","timestamp":1598628800000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijs.0.045344-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,7,1]]},"references-count":37,"journal-issue":{"issue":"Pt_7","published-print":{"date-parts":[[2013,7,1]]}},"URL":"https:\/\/doi.org\/10.1099\/ijs.0.045344-0","relation":{},"ISSN":["1466-5026","1466-5034"],"issn-type":[{"value":"1466-5026","type":"print"},{"value":"1466-5034","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,7,1]]}}}