{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T05:25:40Z","timestamp":1793510740568,"version":"4.5.0"},"reference-count":30,"publisher":"Microbiology Society","issue":"Pt_11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,11,1]]},"abstract":"<jats:p>Strains LMG 27428<jats:sup>T<\/jats:sup> and LMG 27427 were isolated from the caecal content of a chicken and produced butyric, lactic and formic acids as major metabolic end products. The genomic DNA G+C contents of strains LMG 27428<jats:sup>T<\/jats:sup> and LMG 27427 were 40.4 and 38.8 mol%. On the basis of 16S rRNA gene sequence similarity, both strains were most closely related to the generically misclassified <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"species\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.5676\" xlink:type=\"simple\">\n                        <jats:italic>Streptococcus pleomorphus<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> ATCC 29734<jats:sup>T<\/jats:sup>. Strain LMG 27428<jats:sup>T<\/jats:sup> could be distinguished from <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"species\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.5676\" xlink:type=\"simple\">\n                        <jats:italic>S. pleomorphus<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> ATCC 29734<jats:sup>T<\/jats:sup> based on production of more lactic acid and less formic acid in M2GSC medium, a higher DNA G+C content and the absence of activities of acid phosphatase and leucine, arginine, leucyl glycine, pyroglutamic acid, glycine and histidine arylamidases, while strain LMG 27428 was biochemically indistinguishable from <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"species\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.5676\" xlink:type=\"simple\">\n                        <jats:italic>S. pleomorphus<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> ATCC 29734<jats:sup>T<\/jats:sup>. The novel genus <jats:italic>Faecalicoccus<\/jats:italic> gen. nov. within the family <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"family\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.4843\" xlink:type=\"simple\">\n                        <jats:italic>Erysipelotrichaceae<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> is proposed to accommodate strains LMG 27428<jats:sup>T<\/jats:sup> and LMG 27427. Strain LMG 27428<jats:sup>T<\/jats:sup> (\u200a=\u200aDSM 26963<jats:sup>T<\/jats:sup>) is the type strain of <jats:italic>Faecalicoccus acidiformans<\/jats:italic> sp. nov., and strain LMG 27427 (\u200a=\u200aDSM 26962) is a strain of <jats:italic>Faecalicoccus pleomorphus<\/jats:italic> comb. nov. (type strain LMG 17756<jats:sup>T<\/jats:sup>\u200a=\u200aATCC 29734<jats:sup>T<\/jats:sup>\u200a=\u200aDSM 20574<jats:sup>T<\/jats:sup>). Furthermore, the nearest phylogenetic neighbours of the genus <jats:italic>Faecalicoccus<\/jats:italic> are the generically misclassified <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"species\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.4244\" xlink:type=\"simple\">\n                        <jats:italic>Eubacterium cylindroides<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> DSM 3983<jats:sup>T<\/jats:sup> (94.4\u200a% 16S rRNA gene sequence similarity to strain LMG 27428<jats:sup>T<\/jats:sup>) and <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"species\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.4236\" xlink:type=\"simple\">\n                        <jats:italic>Eubacterium biforme<\/jats:italic>\n                     <\/jats:ext-link>\n                  <\/jats:named-content> DSM 3989<jats:sup>T<\/jats:sup> (92.7\u200a% 16S rRNA gene sequence similarity to strain LMG 27428<jats:sup>T<\/jats:sup>). We present genotypic and phenotypic data that allow the differentiation of each of these taxa and propose to reclassify these generically misnamed species of the genus <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"genus\" xlink:type=\"simple\">\n                     <jats:ext-link ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1601\/nm.4228\" xlink:type=\"simple\">\n                        <jats:italic>Eubacterium<\/jats:italic> \n                     <\/jats:ext-link>\n                  <\/jats:named-content>formally as <jats:italic>Faecalitalea cylindroides<\/jats:italic> gen. nov., comb. nov. and <jats:italic>Holdemanella biformis<\/jats:italic> gen. nov., comb. nov., respectively. The type strain of <jats:italic>Faecalitalea cylindroides<\/jats:italic> is DSM 3983<jats:sup>T<\/jats:sup>\u200a=\u200aATCC 27803<jats:sup>T<\/jats:sup>\u200a=\u200aJCM 10261<jats:sup>T<\/jats:sup> and that of <jats:italic>Holdemanella biformis<\/jats:italic> is DSM 3989<jats:sup>T<\/jats:sup>\u200a=\u200aATCC 27806<jats:sup>T<\/jats:sup>\u200a=\u200aCCUG 28091<jats:sup>T<\/jats:sup>.<\/jats:p>","DOI":"10.1099\/ijs.0.064626-0","type":"journal-article","created":{"date-parts":[[2014,9,2]],"date-time":"2014-09-02T04:52:12Z","timestamp":1409633532000},"page":"3877-3884","source":"Crossref","is-referenced-by-count":115,"title":["Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae"],"prefix":"10.1099","volume":"64","author":[{"given":"Celine","family":"De Maesschalck","sequence":"first","affiliation":[{"name":"Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Filip","family":"Van Immerseel","sequence":"additional","affiliation":[{"name":"Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Venessa","family":"Eeckhaut","sequence":"additional","affiliation":[{"name":"Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Siegrid","family":"De Baere","sequence":"additional","affiliation":[{"name":"Department of Pharmacology, Toxicology and Biochemistry, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Margo","family":"Cnockaert","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Faculty of Sciences, Ghent University, K. L. Ledeganckstraat 35, B-9000 Ghent, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Siska","family":"Croubels","sequence":"additional","affiliation":[{"name":"Department of Pharmacology, Toxicology and Biochemistry, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Freddy","family":"Haesebrouck","sequence":"additional","affiliation":[{"name":"Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Richard","family":"Ducatelle","sequence":"additional","affiliation":[{"name":"Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peter","family":"Vandamme","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Faculty of Sciences, Ghent University, K. 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nov.","volume":"49","author":"Coenye","year":"1999","journal-title":"Int J Syst Bacteriol"},{"key":"r4","doi-asserted-by":"crossref","first-page":"812","DOI":"10.1099\/00207713-44-4-812","article-title":"The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations","volume":"44","author":"Collins","year":"1994","journal-title":"Int J Syst Bacteriol"},{"key":"r5","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1016\/j.jpba.2013.02.032","article-title":"Development of a HPLC-UV method for the quantitative determination of four short-chain fatty acids and lactic acid produced by intestinal bacteria during in vitro fermentation","volume":"80","author":"De Baere","year":"2013","journal-title":"J Pharm Biomed Anal"},{"key":"r6","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1186\/1471-2105-5-113","article-title":"muscle: a multiple sequence alignment method with reduced time and space 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Bacteriol"},{"key":"r10","doi-asserted-by":"crossref","first-page":"224","DOI":"10.1099\/00207713-39-3-224","article-title":"Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains","volume":"39","author":"Ezaki","year":"1989","journal-title":"Int J Syst Bacteriol"},{"key":"r11","doi-asserted-by":"crossref","first-page":"818","DOI":"10.1128\/JCM.34.4.818-823.1996","article-title":"HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci","volume":"34","author":"Goh","year":"1996","journal-title":"J Clin Microbiol"},{"key":"r12","doi-asserted-by":"crossref","first-page":"1669","DOI":"10.1101\/gr.2649204","article-title":"cpnDB: a chaperonin sequence database","volume":"14","author":"Hill","year":"2004","journal-title":"Genome 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Bacteriol"},{"key":"r16","doi-asserted-by":"crossref","first-page":"716","DOI":"10.1099\/ijs.0.038075-0","article-title":"Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species","volume":"62","author":"Kim","year":"2012","journal-title":"Int J Syst Evol Microbiol"},{"key":"r17","doi-asserted-by":"crossref","first-page":"1647","DOI":"10.1126\/science.1155725","article-title":"Evolution of mammals and their gut microbes","volume":"320","author":"Ley","year":"2008","journal-title":"Science"},{"key":"r18","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1099\/00207713-38-1-15","article-title":"Phylogenetic relationships of anaerobic streptococci","volume":"38","author":"Ludwig","year":"1988","journal-title":"Int J Syst Bacteriol"},{"key":"r19","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1016\/S0021-9673(01)83344-6","article-title":"Measurement of deoxyguanosine\/thymidine ratios in complex mixtures by 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