{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T02:18:03Z","timestamp":1792117083876,"version":"4.4.0"},"reference-count":61,"publisher":"Microbiology Society","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,9,1]]},"abstract":"\n The phylogeny of enterobacterial species commonly found in clinical samples was analysed by comparing partial sequences of their elongation factor Tu gene (\n tuf<\/jats:italic>\n ) and of their F-ATPase\n \u03b2<\/jats:italic>\n -subunit gene (\n atpD<\/jats:italic>\n ). An 884\u2005bp fragment for\n tuf<\/jats:italic>\n and an 884 or 871\u2005bp fragment for\n atpD<\/jats:italic>\n were sequenced for 96 strains representing 78 species from 31 enterobacterial genera. The\n atpD<\/jats:italic>\n sequence analysis exhibited an indel specific to\n Pantoea<\/jats:italic>\n and\n Tatumella<\/jats:italic>\n species, showing, for the first time, a tight phylogenetic affiliation between these two genera. Comprehensive\n tuf<\/jats:italic>\n and\n atpD<\/jats:italic>\n phylogenetic trees were constructed and are in agreement with each other. Monophyletic genera are\n Cedecea<\/jats:italic>\n ,\n Edwardsiella<\/jats:italic>\n ,\n Proteus<\/jats:italic>\n ,\n Providencia<\/jats:italic>\n ,\n Salmonella<\/jats:italic>\n ,\n Serratia<\/jats:italic>\n ,\n Raoultella<\/jats:italic>\n and\n Yersinia<\/jats:italic>\n . Analogous trees based on 16S rRNA gene sequences available from databases were also reconstructed. The\n tuf<\/jats:italic>\n and\n atpD<\/jats:italic>\n phylogenies are in agreement with the 16S rRNA gene sequence analysis, and distance comparisons revealed that the\n tuf<\/jats:italic>\n and\n atpD<\/jats:italic>\n genes provide better discrimination for pairs of species belonging to the family\n Enterobacteriaceae<\/jats:italic>\n . In conclusion, phylogeny based on\n tuf<\/jats:italic>\n and\n atpD<\/jats:italic>\n conserved genes allows discrimination between species of the\n Enterobacteriaceae<\/jats:italic>\n .\n <\/jats:p>","DOI":"10.1099\/ijs.0.63539-0","type":"journal-article","created":{"date-parts":[[2005,9,15]],"date-time":"2005-09-15T18:53:25Z","timestamp":1126810405000},"page":"2013-2025","source":"Crossref","is-referenced-by-count":98,"title":["Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase \u03b2-subunit"],"prefix":"10.1099","volume":"55","author":[{"given":"Sonia","family":"Paradis","sequence":"first","affiliation":[{"name":"Infectio Diagnostic (I.D.I.) Inc., Sainte-Foy, Qu\u00e9bec, Canada G1V 2K8"},{"name":"Division de microbiologie, facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval, Sainte-Foy, Qu\u00e9bec, Canada G1K 7P4"},{"name":"Centre de recherche en infectiologie de l'Universit\u00e9 Laval, Centre hospitalier universitaire de Qu\u00e9bec (pavillon CHUL), Sainte-Foy, Qu\u00e9bec, Canada G1V 4G2"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maurice","family":"Boissinot","sequence":"additional","affiliation":[{"name":"Division de microbiologie, facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval, Sainte-Foy, Qu\u00e9bec, Canada G1K 7P4"},{"name":"Centre de recherche en infectiologie de l'Universit\u00e9 Laval, Centre hospitalier universitaire de Qu\u00e9bec (pavillon CHUL), Sainte-Foy, Qu\u00e9bec, Canada G1V 4G2"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nancy","family":"Paquette","sequence":"additional","affiliation":[{"name":"Infectio Diagnostic (I.D.I.) 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