{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T01:17:36Z","timestamp":1790212656627,"version":"4.1.0"},"reference-count":37,"publisher":"Microbiology Society","issue":"3","funder":[{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"crossref","award":["R01 AI121207"],"award-info":[{"award-number":["R01 AI121207"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"crossref","award":["R01 TW009504"],"award-info":[{"award-number":["R01 TW009504"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"crossref","award":["R25 TW009338"],"award-info":[{"award-number":["R25 TW009338"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"crossref","award":["U01 AI088752"],"award-info":[{"award-number":["U01 AI088752"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"crossref","award":["R01 AI052473"],"award-info":[{"award-number":["R01 AI052473"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,3,1]]},"abstract":"<jats:p>Four spirochetes (F1<jats:sup>T<\/jats:sup>, B21, Yale<jats:sup>T<\/jats:sup> and AMB6-RJ) were isolated from environmental sources: F1<jats:sup>T<\/jats:sup> and B21 from soils of an urban slum community in Salvador (Brazil), Yale<jats:sup>T<\/jats:sup> from river water in New Haven, Connecticut (USA) and AMB6-RJ from a pond in a horse farm in Rio de Janeiro (Brazil). Isolates were helix-shaped, aerobic, highly motile and non-virulent in a hamster model of infection. Draft genomes of the strains were obtained and analysed to determine the relatedness to other species of the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/doi.org\/10.1601\/nm.7893\" xlink:type=\"simple\">Leptospira<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>. The analysis of 498 core genes showed that strains F1<jats:sup>T<\/jats:sup>\/B21 and Yale<jats:sup>T<\/jats:sup>\/AMB6-RJ formed two distinct phylogenetic clades within the \u2018Pathogens\u2019 group (group I). The average nucleotide identity (ANI) values of strains F1<jats:sup>T<\/jats:sup>\/B21 and Yale<jats:sup>T<\/jats:sup>\/AMB6-RJ to other previously described <jats:italic>Leptospira<\/jats:italic> species were below &lt;84\u200a%\u2009and &lt;82\u200a%, respectively, which confirmed that these isolates should be classified as representatives of two novel species. Therefore, we propose <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/doi.org\/10.1601\/nm.7893\" xlink:type=\"simple\">Leptospira<\/jats:ext-link>\n                     <\/jats:named-content>yasudae<\/jats:italic> sp. nov. and <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/doi.org\/10.1601\/nm.7893\" xlink:type=\"simple\">Leptospira<\/jats:ext-link>\n                     <\/jats:named-content>stimsonii<\/jats:italic> sp. nov. as new species in the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/doi.org\/10.1601\/nm.7893\" xlink:type=\"simple\">Leptospira<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>. The type strains are F1<jats:sup>T<\/jats:sup> (=ATCC-TSD-163=KIT0259=CLEP00287) and Yale<jats:sup>T<\/jats:sup> (=ATCC-TDS-162=KIT0258=CLEP00288), respectively.<\/jats:p>","DOI":"10.1099\/ijsem.0.003480","type":"journal-article","created":{"date-parts":[[2019,6,11]],"date-time":"2019-06-11T14:55:27Z","timestamp":1560264927000},"page":"1450-1456","source":"Crossref","is-referenced-by-count":70,"title":["Leptospira yasudae sp. nov. and Leptospira stimsonii sp. nov., two new species of the pathogenic group isolated from environmental sources"],"prefix":"10.1099","volume":"70","author":[{"given":"Arnau","family":"Casanovas-Massana","sequence":"first","affiliation":[{"name":"Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Camila","family":"Hamond","sequence":"additional","affiliation":[{"name":"Epidemiology of Microbial Diseases, School of Public Health, Yale University, New 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