{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T11:05:36Z","timestamp":1740135936475,"version":"3.37.3"},"reference-count":48,"publisher":"Microbiology Society","issue":"3","funder":[{"name":"Hainan Provincial Natural Science Foundation of China","award":["820RC650"],"award-info":[{"award-number":["820RC650"]}]},{"DOI":"10.13039\/501100010834","name":"Education Department of Hainan Province","doi-asserted-by":"crossref","award":["Hnky2019ZD-27"],"award-info":[{"award-number":["Hnky2019ZD-27"]}],"id":[{"id":"10.13039\/501100010834","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"the National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["82060377, 81760376"],"award-info":[{"award-number":["82060377, 81760376"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"name":"the Finance science and technology project of Hainan Privince","award":["ZDYF2018155"],"award-info":[{"award-number":["ZDYF2018155"]}]},{"name":"the Key Science and Technology Projects of Hainan Province","award":["ZDYF2018140"],"award-info":[{"award-number":["ZDYF2018140"]}]},{"name":"Key R&D Programs of Hainan Province","award":["ZDYF2018113"],"award-info":[{"award-number":["ZDYF2018113"]}]},{"name":"the Innovative research project for graduate students of Hainan Medical University","award":["HYYS2020-18"],"award-info":[{"award-number":["HYYS2020-18"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,6,6]]},"abstract":"<jats:p>Two strains (NLN63<jats:sup>T<\/jats:sup> and NLN82) of Gram-stain-negative, oxidase- and catalase-positive, bacilli-shaped organisms were isolated from the faecal samples of two separate <jats:italic>Rattus norvegicus<\/jats:italic> in Baisha county of Hainan Province, Southern PR China. Phylogenetic analysis based on the near full-length 16S rRNA sequences revealed that strain NLN63<jats:sup>T<\/jats:sup> belongs to the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1764\" xlink:type=\"simple\">Pelistega<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>, having maximum similarity to <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.27917\" xlink:type=\"simple\">Pelistega suis<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> CCUG 64465<jats:sup>T<\/jats:sup> (97.1\u200a%), <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1765\" xlink:type=\"simple\">Pelistega europaea<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> CCUG 39967<jats:sup>T<\/jats:sup> (96.2\u200a%) and <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.25334\" xlink:type=\"simple\">Pelistega indica<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> DSM 27484<jats:sup>T<\/jats:sup> (96.2\u200a%), respectively. The phylogenomic tree built on 553 core genes from genomes of 20 species in the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1764\" xlink:type=\"simple\">Pelistega<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> and other adjacent genera further confirmed that strains NLN63<jats:sup>T<\/jats:sup> and NLN82 form a distinct subline and exhibit specific phylogenetic affinity with <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1765\" xlink:type=\"simple\">P. europaea<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> CCUG 39967<jats:sup>T<\/jats:sup>. In digital DNA\u2013DNA hybridization analyses, strain NLN63<jats:sup>T<\/jats:sup> showed low estimated DNA reassociation values (21.4\u201322.6\u200a%) with the type strains of the species in the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1764\" xlink:type=\"simple\">Pelistega<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>. The DNA G+C contents of strains NLN63<jats:sup>T<\/jats:sup> and NLN82 were 37.3 and 37.1\u2009mol%, respectively. Strain NLN63<jats:sup>T<\/jats:sup> had a unique MALDI-TOF MS profile, contained Q-8 as the major quinone and C<jats:sub>16\u200a:\u200a0<\/jats:sub>, summed feature 8 (C<jats:sub>18\u200a:\u200a1<\/jats:sub>\n                  <jats:italic>\u2009\u03c9<\/jats:italic>7<jats:italic>c<\/jats:italic>\/C<jats:sub>18\u200a:\u200a1<\/jats:sub>\n                  <jats:italic>\u2009\u03c9<\/jats:italic>6<jats:italic>c<\/jats:italic> or both) and summed feature 3 (C<jats:sub>16\u200a:\u200a1<\/jats:sub>\n                  <jats:italic>\u2009\u03c9<\/jats:italic>7<jats:italic>c<\/jats:italic>\/C<jats:sub>16\u200a:\u200a1<\/jats:sub>\n                  <jats:italic>\u2009\u03c9<\/jats:italic>6<jats:italic>c<\/jats:italic> or both) as the dominant fatty acids. Based upon these polyphasic characterization data obtained from the present study, a novel species of the genus <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.1764\" xlink:type=\"simple\">Pelistega<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>, <jats:italic>Pelistega ratti<\/jats:italic> sp. nov., is proposed with NLN63<jats:sup>T<\/jats:sup> (=GDMCC 1.1697<jats:sup>T<\/jats:sup>=JCM 33788<jats:sup>T<\/jats:sup>) as the type strain.<\/jats:p>","DOI":"10.1099\/ijsem.0.004733","type":"journal-article","created":{"date-parts":[[2021,3,10]],"date-time":"2021-03-10T16:16:24Z","timestamp":1615392984000},"source":"Crossref","is-referenced-by-count":6,"title":["Pelistega ratti sp. nov. from Rattus norvegicus of Hainan island"],"prefix":"10.1099","volume":"71","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6016-8188","authenticated-orcid":false,"given":"Xiaojun","family":"Zhou","sequence":"first","affiliation":[{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"},{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Clinical laboratory department of Hainan General Hospital, Haikou, 570311, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4045-6390","authenticated-orcid":false,"given":"Duanduan","family":"Xuan","sequence":"additional","affiliation":[{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"},{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shoukui","family":"Hu","sequence":"additional","affiliation":[{"name":"Peking University shougang hospital, Beijing, 100144, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jiang","family":"Du","sequence":"additional","affiliation":[{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"},{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ji","family":"Pu","sequence":"additional","affiliation":[{"name":"State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dong","family":"Jin","sequence":"additional","affiliation":[{"name":"State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fan","family":"Zhao","sequence":"additional","affiliation":[{"name":"Peking University shougang hospital, Beijing, 100144, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Feifei","family":"Yin","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiuji","family":"Cui","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi","family":"Huang","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gaoyu","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qiang","family":"Wu","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gang","family":"Lu","sequence":"additional","affiliation":[{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4134-5753","authenticated-orcid":false,"given":"Lina","family":"Niu","sequence":"additional","affiliation":[{"name":"Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, PR China"},{"name":"Department of Pathogen Biology, Hainan Medical University, Haikou, Hainan, PR China"},{"name":"Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"345","reference":[{"key":"R1","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-48-2-431"},{"key":"R2","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.059782-0"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.000673"},{"key":"R4","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.035840-0"},{"key":"R5","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.001337"},{"key":"R6","first-page":"78","article-title":"Application of multiplex-PCR for bifidobacteria and propionibacteria genus identification","volume":"5","author":"Andriushchenko","year":"2014","journal-title":"Zh Mikrobiol Epidemiol Immunobiol"},{"key":"R7","doi-asserted-by":"publisher","DOI":"10.1007\/BF01731581"},{"key":"R8","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msw054"},{"article-title":"SEQ tools, a software package for analysis of nucleotide and protein sequences","year":"2002","author":"Rasmussen","key":"R9"},{"key":"R10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu033"},{"key":"R11","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2009.0179"},{"key":"R12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts565"},{"key":"R13","doi-asserted-by":"publisher","DOI":"10.1016\/s0176-6724(88)80120-2"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1016\/S0960-9822(98)70141-1"},{"key":"R15","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.60.5.1614-1621.1994"},{"key":"R16","first-page":"152","article-title":"Taxonomic parameters revisited: tarnished gold standards","volume":"33","author":"Stackebrandt","year":"2006","journal-title":"Microbiol Today"},{"key":"R17","doi-asserted-by":"publisher","DOI":"10.4056\/sigs.531120"},{"key":"R18","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02136-14"},{"key":"R19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0150183"},{"key":"R20","doi-asserted-by":"publisher","DOI":"10.1007\/s00203-013-0888-4"},{"key":"R21","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.002516"},{"key":"R22","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.001872"},{"key":"R23","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-07641-9"},{"key":"R24","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00264-19"},{"key":"R25","doi-asserted-by":"publisher","DOI":"10.1016\/j.jchromb.2018.03.018"},{"key":"R26","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0115813"},{"key":"R27","doi-asserted-by":"publisher","DOI":"10.1016\/j.syapm.2015.02.001"},{"key":"R28","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00190-20"},{"key":"R29","doi-asserted-by":"publisher","DOI":"10.1007\/s10482-017-0844-4"},{"key":"R30","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2016.08.019"},{"key":"R31","doi-asserted-by":"publisher","DOI":"10.3343\/alm.2016.36.2.117"},{"key":"R32","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0006874"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.1099\/jmm.0.000831"},{"key":"R34","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.33.2.385-388.1995"},{"key":"R35","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.002119"},{"key":"R36","first-page":"1","volume-title":"Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids","volume":"101","author":"Sasser","year":"1990"},{"key":"R37","first-page":"267","volume-title":"Chemical Methods in Bacterial Systematics","author":"Collins","year":"1985"},{"key":"R38","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.55.4.897-901.1989"},{"key":"R39","doi-asserted-by":"publisher","DOI":"10.1016\/S0723-2020(11)80158-X"},{"key":"R40","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.1990.tb03996.x"},{"key":"R41","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-51-3-971"},{"key":"R42","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.64126-0"},{"key":"R43","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.63989-0"},{"key":"R44","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-51-5-1867"},{"key":"R45","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-42-1-19"},{"key":"R46","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.63466-0"},{"key":"R47","first-page":"2084","article-title":"Candidimonas bauzanensis sp. nov., isolated from soil, and emended description of the genus Candidimonas VazMoreira, et al. 2011","volume":"2012","author":"Zhang","journal-title":"Int J Syst Evol Microbiol"},{"key":"R48","doi-asserted-by":"publisher","DOI":"10.4238\/2015.September.21.1"}],"container-title":["International Journal of Systematic and Evolutionary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijsem.0.004733?crawler=true","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,20]],"date-time":"2021-05-20T17:44:10Z","timestamp":1621532650000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijsem.0.004733"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,6,6]]},"references-count":48,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2019,6,6]]}},"URL":"https:\/\/doi.org\/10.1099\/ijsem.0.004733","relation":{},"ISSN":["1466-5026","1466-5034"],"issn-type":[{"type":"print","value":"1466-5026"},{"type":"electronic","value":"1466-5034"}],"subject":[],"published":{"date-parts":[[2019,6,6]]}}}