{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,14]],"date-time":"2025-05-14T00:09:53Z","timestamp":1747181393941,"version":"3.40.5"},"reference-count":45,"publisher":"Microbiology Society","issue":"9","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,9,20]]},"abstract":"Four strictly anaerobic, Gram-stain-positive, urease-, oxidase- and catalase-negative, rod-shaped strains (zg-886T<\/jats:sup>\/zg-887 and zg-1050T<\/jats:sup>\/zg-1084) were isolated from Marmota himalayana<\/jats:italic>. Comparison analysis of 16S rRNA genes showed that the two strain pairs belong to the family \n \n Eggerthellaceae<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic>: zg-1050T<\/jats:sup> and zg-1084 were most closely related to \n \n Berryella intestinalis<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> 68-1-3T<\/jats:sup> (97.2\u200a%), while zg-886T<\/jats:sup>\/zg-887 had the highest similarity to \n \n Slackia piriformis<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> YIT 12062T<\/jats:sup> (91.6\u200a%), followed by \n \n Paraeggerthella hongkongensis<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> DSM 16106T<\/jats:sup> (91.4\u200a%) and \n \n Gordonibacter urolithinfaciens<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> DSM 27213T<\/jats:sup> (91.4\u200a%). Phylogenetic analyses based on 16S rRNA genes and genomes showed that the two strain pairs represent two different lineages within the family \n \n Eggerthellaceae<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic>. The genomic G+C contents of strains zg-886T<\/jats:sup> and zg-1050T<\/jats:sup> were 63.0 and 66.3\u200amol%, respectively. The values of digital DNA\u2013DNA hybridization, average nucleotide identity, average amino acid identity and the percentage of conserved proteins between the two new type strains and members of the family \n \n Eggerthellaceae<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> were lower than the respective thresholds for delineation of a species or genus. In contrast to the absence of any known quinones in strain zg-1050T<\/jats:sup>, strain zg-886T<\/jats:sup> contained MK-6 (42.5\u200a%), MMK-6 (25.0\u200a%) and DMMK-6 (32.5\u200a%). The four strains grew optimally at pH 7.0, 37 \u00baC and 0.5\u200a% NaCl (w\/v). According to these polyphasic analyses, two new members within the family \n \n Eggerthellaceae<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> are proposed, Xiamenia xianingshaonis<\/jats:italic> gen. nov., sp. nov. (zg-886T<\/jats:sup>=JCM 34097T<\/jats:sup>=GDMCC 1.1710T<\/jats:sup>) and Berryella wangjianweii<\/jats:italic> sp. nov. (zg-1050T<\/jats:sup>=GDMCC 1.2426T<\/jats:sup>=JCM 34748T<\/jats:sup>).<\/jats:p>","DOI":"10.1099\/ijsem.0.005509","type":"journal-article","created":{"date-parts":[[2022,9,20]],"date-time":"2022-09-20T17:17:02Z","timestamp":1663694222000},"source":"Crossref","is-referenced-by-count":3,"title":["New members of the family Eggerthellaceae isolated from Marmota himalayana: Xiamenia xianingshaonis gen. nov., sp. nov., from intestinal contents, and Berryella wangjianweii sp. nov., from trachea"],"prefix":"10.1099","volume":"72","author":[{"given":"Gui","family":"Zhang","sequence":"first","affiliation":[{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"},{"name":"Department of Epidemiology, School of Public Health, Shanxi Medical University, Taiyuan 030001, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xianglian","family":"Lv","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"},{"name":"Department of Epidemiology, School of Public Health, Shanxi Medical University, Taiyuan 030001, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yanpeng","family":"Cheng","sequence":"additional","affiliation":[{"name":"Shenzhen Center for Disease Control and Prevention, Shenzhen 518073, PR China"},{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xin-He","family":"Lai","sequence":"additional","affiliation":[{"name":"Henan Key Laboratory of Biomolecular Recognition and Sensing, College of Chemistry and Chemical Engineering, Henan Joint International Research Laboratory of Chemo\/Biosensing and Early Diagnosis of Major Diseases, Shangqiu Normal University, Shangqiu 476000, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jing","family":"Yang","sequence":"additional","affiliation":[{"name":"Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 102206, PR China"},{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dong","family":"Jin","sequence":"additional","affiliation":[{"name":"Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 102206, PR China"},{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shan","family":"Lu","sequence":"additional","affiliation":[{"name":"Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 102206, PR China"},{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ji","family":"Pu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Liyun","family":"Liu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3649-8229","authenticated-orcid":false,"given":"Jianguo","family":"Xu","sequence":"additional","affiliation":[{"name":"Department of Epidemiology, School of Public Health, Shanxi Medical University, Taiyuan 030001, PR China"},{"name":"Institute of Public Health, Nankai University, Tianjin 300071, PR China"},{"name":"Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 102206, PR China"},{"name":"State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"345","reference":[{"key":"R1","doi-asserted-by":"publisher","DOI":"10.1186\/s12889-016-2697-6"},{"key":"R2","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.005069"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.000228"},{"key":"R4","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.000163"},{"key":"R5","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.001609"},{"key":"R6","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-19929-w"},{"key":"R7","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.002735"},{"key":"R8","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.002705"},{"key":"R9","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.758"},{"key":"R10","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-49-3-1193"},{"key":"R11","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-50-2-633"},{"key":"R12","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.003466"},{"key":"R13","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.001755"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1016\/j.syapm.2015.02.001"},{"key":"R15","doi-asserted-by":"publisher","DOI":"10.1002\/0471250953.bi0203s00"},{"key":"R16","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msy096"},{"key":"R17","doi-asserted-by":"publisher","DOI":"10.1093\/oxfordjournals.molbev.a040454"},{"key":"R18","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.1985.tb00420.x"},{"key":"R19","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.004151"},{"key":"R20","doi-asserted-by":"publisher","DOI":"10.1007\/s10482-018-01211-1"},{"key":"R21","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.048371-0"},{"key":"R22","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.002516"},{"key":"R23","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msp077"},{"key":"R24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts565"},{"key":"R25","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/sys062"},{"key":"R26","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv421"},{"key":"R27","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/30.7.1575"},{"key":"R28","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz848"},{"key":"R29","doi-asserted-by":"publisher","DOI":"10.4056\/sigs.531120"},{"key":"R30","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.64483-0"},{"key":"R31","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2017.113"},{"key":"R32","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01688-14"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.458"},{"key":"R34","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.65404-0"},{"key":"R35","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-021-02739-8"},{"key":"R36","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.005900-0"},{"key":"R37","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2004.04.012"},{"key":"R38","doi-asserted-by":"publisher","DOI":"10.4056\/sigs.3246665"},{"key":"R39","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-49-2-595"},{"key":"R40","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.017533-0"},{"key":"R41","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-46-4-1120"},{"key":"R42","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.004987"},{"key":"R43","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.004840"},{"key":"R44","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.016774-0"},{"key":"R45","first-page":"227","volume-title":"Actinomycete Taxonomy","author":"Lechevalier","year":"1980"}],"container-title":["International Journal of Systematic and Evolutionary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijsem.0.005509?crawler=true","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,9,20]],"date-time":"2022-09-20T17:17:06Z","timestamp":1663694226000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/ijsem\/10.1099\/ijsem.0.005509"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,9,20]]},"references-count":45,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2022,9,20]]}},"URL":"https:\/\/doi.org\/10.1099\/ijsem.0.005509","relation":{},"ISSN":["1466-5026","1466-5034"],"issn-type":[{"type":"print","value":"1466-5026"},{"type":"electronic","value":"1466-5034"}],"subject":[],"published":{"date-parts":[[2022,9,20]]}}}