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Seabird populations on the remote Amsterdam Island in the Indian Ocean have been in decline for the past three decades, with avian cholera caused by\n                    <jats:italic>Pasteurella multocida<\/jats:italic>\n                    proposed as the primary driver. However,\n                    <jats:italic>Erysipelothrix<\/jats:italic>\n                    species have also been sporadically detected from albatrosses on Amsterdam Island and may be contributing to some of the observed mortality. In this study, we genomically characterized 16\n                    <jats:italic>Erysipelothrix<\/jats:italic>\n                    species isolates obtained from three Indian yellow-nosed albatross (\n                    <jats:italic>Thalassarche carteri<\/jats:italic>\n                    ) chick carcasses in 2019. Histological analyses suggest that they died of bacterial septicaemia. Two isolates were sequenced using both Illumina short-read and MinION long-read approaches, which \u2013 following hybrid assembly \u2013 resulted in closed circular genomes. Mapping of Illumina reads from the remaining isolates to one of these new reference genomes revealed that all 16 isolates were closely related, with a maximum of 13 nucleotide differences distinguishing any pair of isolates. The nucleotide diversity of isolates obtained from the same or different carcasses was similar, suggesting all three chicks were likely infected from a common source. These genomes were compared with a global collection of genomes from\n                    <jats:italic>Erysipelothrix rhusiopathiae<\/jats:italic>\n                    and other species from the same genus. The isolates from albatrosses were phylogenetically distinct, sharing a most recent common ancestor with\n                    <jats:italic>E. rhusiopathiae<\/jats:italic>\n                    . Based on phylogenomic analysis and standard thresholds for average nucleotide identity and digital DNA\u2013DNA hybridization, these isolates represent a novel\n                    <jats:italic>Erysipelothrix<\/jats:italic>\n                    species, for which we propose the name\n                    <jats:italic>Erysipelothrix amsterdamensis<\/jats:italic>\n                    sp. nov. The type strain is A18Y020d\n                    <jats:sup>T<\/jats:sup>\n                    (=CIP 112216\n                    <jats:sup>T<\/jats:sup>\n                    =DSM 115297\n                    <jats:sup>T<\/jats:sup>\n                    ). The implications of this bacterium for albatross conservation will require further study.\n                  <\/jats:p>","DOI":"10.1099\/ijsem.0.006264","type":"journal-article","created":{"date-parts":[[2024,2,15]],"date-time":"2024-02-15T13:16:42Z","timestamp":1708003002000},"source":"Crossref","is-referenced-by-count":11,"title":["Erysipelothrix amsterdamensis sp. nov., associated with mortalities among endangered seabirds"],"prefix":"10.1099","volume":"74","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4882-6488","authenticated-orcid":false,"given":"Jiadong","family":"Zhong","sequence":"first","affiliation":[{"name":"School of Life Sciences, Westlake University, Hangzhou, Zhejiang, PR China"},{"name":"School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow, G12 8QQ, 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