{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T20:17:03Z","timestamp":1790626623671,"version":"4.1.0"},"reference-count":50,"publisher":"Microbiology Society","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,10,1]]},"DOI":"10.1099\/jgv.0.000231","type":"journal-article","created":{"date-parts":[[2015,7,9]],"date-time":"2015-07-09T23:12:36Z","timestamp":1436483556000},"page":"2999-3009","source":"Crossref","is-referenced-by-count":15,"title":["Next-generation sequencing shows West Nile virus quasispecies diversification after a single passage in a carrion crow (Corvus corone) in vivo infection model"],"prefix":"10.1099","volume":"96","author":[{"given":"M.","family":"Dridi","sequence":"first","affiliation":[{"name":"Operational Direction of Viral Diseases, Veterinary and Agrochemical Research Center (CODA-CERVA-VAR), 99 Groeselenberg, 1180 Brussels, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"T.","family":"Rosseel","sequence":"additional","affiliation":[{"name":"Operational Direction of Viral Diseases, Veterinary and Agrochemical Research Center (CODA-CERVA-VAR), 99 Groeselenberg, 1180 Brussels, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Orton","sequence":"additional","affiliation":[{"name":"Boyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK"},{"name":"MRC-University of Glasgow Centre for Virus Research, Institute of Infection Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G61 1QH, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"P.","family":"Johnson","sequence":"additional","affiliation":[{"name":"Boyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Lecollinet","sequence":"additional","affiliation":[{"name":"UMR1161 Virologie INRA, ANSES, ENVA, French Agency for Food, Environmental and Occupational Health & Safety (Anses), 23 avenue du G\u00e9n\u00e9ral De Gaulle, 94706 Maisons-Alfort, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B.","family":"Muylkens","sequence":"additional","affiliation":[{"name":"Integrated Veterinary Research Unit, University of Namur, 61 rue de Bruxelles, 5000 Namur, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B.","family":"Lambrecht","sequence":"additional","affiliation":[{"name":"Operational Direction of Viral Diseases, Veterinary and Agrochemical Research Center (CODA-CERVA-VAR), 99 Groeselenberg, 1180 Brussels, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Van Borm","sequence":"additional","affiliation":[{"name":"Operational Direction of Viral Diseases, Veterinary and Agrochemical Research Center (CODA-CERVA-VAR), 99 Groeselenberg, 1180 Brussels, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"345","reference":[{"key":"jgv000231-Anthony","doi-asserted-by":"publisher","DOI":"10.1016\/j.antiviral.2008.12.007"},{"key":"jgv000231-Bahuon1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0047666"},{"key":"jgv000231-Barzon1","doi-asserted-by":"publisher","DOI":"10.3390\/ijms12117861"},{"key":"jgv000231-Brackney1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1000502"},{"key":"jgv000231-Brinton1","doi-asserted-by":"publisher","DOI":"10.3390\/v6010013"},{"key":"jgv000231-Brinton12","doi-asserted-by":"publisher","DOI":"10.1016\/0042-6822(88)90468-0"},{"key":"jgv000231-Brinton123","doi-asserted-by":"publisher","DOI":"10.1016\/0042-6822(86)90012-7"},{"key":"jgv000231-Bunnik1","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00757-08"},{"key":"jgv000231-Campbell1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-8-47"},{"key":"jgv000231-Coia1","doi-asserted-by":"publisher","DOI":"10.1099\/0022-1317-69-1-1"},{"key":"jgv000231-Deardorff1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002335"},{"key":"jgv000231-Deas1","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.79.8.4599-4609.2005"},{"key":"jgv000231-Deas12","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00069-07"},{"key":"jgv000231-Dridi1","doi-asserted-by":"publisher","DOI":"10.1111\/tbed.12144"},{"key":"jgv000231-Ebel1","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.05637-11"},{"key":"jgv000231-Eigen1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00420631"},{"key":"jgv000231-Elghonemy1","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2004.11.008"},{"key":"jgv000231-Grubaugh1","doi-asserted-by":"crossref","first-page":"e1004874","DOI":"10.1371\/journal.ppat.1004874","article-title":"Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness","volume":"11","author":"Grubaugh","year":"2015","journal-title":"PLoS Pathog"},{"key":"jgv000231-Henn1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002529"},{"key":"jgv000231-Holland1","doi-asserted-by":"publisher","DOI":"10.1126\/science.7041255"},{"key":"jgv000231-Hubalek1","doi-asserted-by":"crossref","first-page":"643","DOI":"10.3201\/eid0505.990505","article-title":"West Nile fever\u2014a reemerging mosquito-borne viral disease in Europe","volume":"5","author":"Hub\u00e1lek","year":"1999","journal-title":"Emerg Infect Dis"},{"key":"jgv000231-Jerzak1","doi-asserted-by":"publisher","DOI":"10.1099\/vir.0.81015-0"},{"key":"jgv000231-Jerzak12","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2006.10.029"},{"key":"jgv000231-Jerzak123","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2008.02.032"},{"key":"jgv000231-Joshi1","article-title":"Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files (version 1.33)","author":"Joshi","year":"2011"},{"key":"jgv000231-Komar1","doi-asserted-by":"publisher","DOI":"10.3201\/eid0903.020628"},{"key":"jgv000231-Li1","doi-asserted-by":"publisher","DOI":"10.1099\/vir.0.013854-0"},{"key":"jgv000231-Manzin1","doi-asserted-by":"crossref","first-page":"6271","DOI":"10.1128\/JVI.72.7.6271-6276.1998","article-title":"Evolution of hypervariable region 1 of hepatitis C virus in primary infection","volume":"72","author":"Manzin","year":"1998","journal-title":"J Virol"},{"key":"jgv000231-Murray1","doi-asserted-by":"publisher","DOI":"10.1051\/vetres\/2010039"},{"key":"jgv000231-Myles1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0803408105"},{"key":"jgv000231-Pfeffer1","doi-asserted-by":"publisher","DOI":"10.1186\/1756-3305-3-35"},{"key":"jgv000231-Phipps1","doi-asserted-by":"publisher","DOI":"10.1080\/03079450701460492"},{"key":"jgv000231-R1","article-title":"R: A language and environment for statistical computing","year":"2014","journal-title":"R Found Stat Comput Vienna, Austria"},{"key":"jgv000231-Senne1","doi-asserted-by":"publisher","DOI":"10.2307\/1593105"},{"key":"jgv000231-Shirafuji1","doi-asserted-by":"publisher","DOI":"10.1637\/8504-102708-Reg.1"},{"key":"jgv000231-Smits1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cbpa.2008.08.025"},{"key":"jgv000231-Tang1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jcv.2008.08.004"},{"key":"jgv000231-Totani1","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1637\/9743-032811-Reg.1","article-title":"Glycosylation of the envelope protein of West Nile virus affects its replication in chicks","volume":"55","author":"Totani","year":"2011","journal-title":"Avian Dis"},{"key":"jgv000231-Turell1","doi-asserted-by":"publisher","DOI":"10.1093\/jmedent\/42.5.891"},{"key":"jgv000231-Van1","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-2004-4_30"},{"key":"jgv000231-van1","doi-asserted-by":"publisher","DOI":"10.1007\/s00705-004-0463-z"},{"key":"jgv000231-Van12","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2012.01.036"},{"key":"jgv000231-Vignuzzi1","doi-asserted-by":"publisher","DOI":"10.1038\/nature04388"},{"key":"jgv000231-Villarreal1","doi-asserted-by":"crossref","first-page":"79","DOI":"10.4331\/wjbc.v4.i4.79","article-title":"Rethinking quasispecies theory: from fittest type to cooperative consortia","volume":"4","author":"Villarreal","year":"2013","journal-title":"World J Biol Chem"},{"key":"jgv000231-Westerdahl1","doi-asserted-by":"publisher","DOI":"10.1038\/sj.hdy.6800450"},{"key":"jgv000231-Wheeler1","doi-asserted-by":"publisher","DOI":"10.1525\/cond.2009.080013"},{"key":"jgv000231-Wilm1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks918"},{"key":"jgv000231-Yang1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-674"},{"key":"jgv000231-Yu1","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.79.4.2309-2324.2005"},{"key":"jgv000231-Zhang1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-15-305"}],"container-title":["Journal of General Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/jgv\/10.1099\/jgv.0.000231?crawler=true","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,3,2]],"date-time":"2020-03-02T11:14:16Z","timestamp":1583147656000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/jgv\/10.1099\/jgv.0.000231"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,10,1]]},"references-count":50,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2015,10,1]]}},"URL":"https:\/\/doi.org\/10.1099\/jgv.0.000231","relation":{},"ISSN":["0022-1317","1465-2099"],"issn-type":[{"value":"0022-1317","type":"print"},{"value":"1465-2099","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,10,1]]}}}