{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T03:34:50Z","timestamp":1792553690978,"version":"4.5.0"},"reference-count":33,"publisher":"Microbiology Society","issue":"8","license":[{"start":{"date-parts":[[2022,9,12]],"date-time":"2022-09-12T00:00:00Z","timestamp":1662940800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,9,12]]},"abstract":"<jats:p>\n                  <jats:bold>Introduction.<\/jats:bold> Nocardia is an opportunistic pathogen that can cause significant morbidity and mortality, particularly in the immunocompromised host. Antimicrobial susceptibility profiles vary across <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> spp. and vary within Australia as well as worldwide. Knowledge of local susceptibility patterns is important in informing appropriate empiric antimicrobial therapy.<\/jats:p>\n               <jats:p>\n                  <jats:bold>Gap Statement.<\/jats:bold> This is the largest study to date in Australia that correlates antimicrobial susceptibility profiles with molecular identification of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> species. It is the first study that examines isolates from multiple institutions across the state of Victoria, Australia.<\/jats:p>\n               <jats:p>\n                  <jats:bold>Aim.<\/jats:bold> To investigate the species distribution and antibiotic susceptibility of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> spp. isolates referred to the Mycobacterial Reference Laboratory (MRL) in Victoria, Australia from 2009 to 2019.<\/jats:p>\n               <jats:p>\n                  <jats:bold>Methodology.<\/jats:bold> We conducted a retrospective review of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> spp. isolates which were identified using molecular sequencing. Antimicrobial susceptibility testing was performed using standardized broth microdilution method with Sensititre RAPMYCO1 plates. Species distribution and antibiotic susceptibility profiles were analysed.<\/jats:p>\n               <jats:p>\n                  <jats:bold>Results.<\/jats:bold> In total, 414 <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> isolates were identified to 27 species levels, the majority originating from the respiratory tract (<jats:italic>n<\/jats:italic>=336, 81.2\u200a%). <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6448\" xlink:type=\"simple\">N. nova<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> (<jats:italic>n<\/jats:italic>=147, 35.5\u200a%) was the most frequently isolated, followed by <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6437\" xlink:type=\"simple\">N. cyriacigeorgica<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> (<jats:italic>n<\/jats:italic>=75, 18.1\u200a%). Species distribution varied by isolate source, with <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6438\" xlink:type=\"simple\">N. farcinica<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> and <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6451\" xlink:type=\"simple\">N. paucivorans<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> found more commonly from sterile sites. Linezolid and amikacin had the highest proportion of susceptible isolates (100 and 99% respectively), while low susceptibility rates were detected for ceftriaxone (59\u200a%) and imipenem (41\u200a%). Susceptibility to trimethoprim sulfamethoxazole varied by species (0\u2013100\u200a%).<\/jats:p>\n               <jats:p>\n                  <jats:bold>Conclusion.<\/jats:bold> This is the largest study to date in Australia of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> species distribution and antimicrobial susceptibility patterns. <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6438\" xlink:type=\"simple\">N. farcinica<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> and <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6451\" xlink:type=\"simple\">N. paucivorans<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> were more likely to be isolated from sterile sites, while <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6426\" xlink:type=\"simple\">N. brasiliensis<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> and <jats:italic>N. otitidiscvarium<\/jats:italic> were more likely to be isolated from skin and soft tissue. First line therapeutic antimicrobial recommendations by local guidelines were not necessarily reflective of the <jats:italic>in vitro<\/jats:italic> susceptibility of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> isolates in this study, with high susceptibility detected for linezolid and amikacin, but poor susceptibility demonstrated for ceftriaxone and imipenem. Profiles for trimethoprim-sulfamethoxazole varied across different <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.6418\" xlink:type=\"simple\">Nocardia<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> species, warranting ongoing susceptibility testing for targeted clinical use.<\/jats:p>","DOI":"10.1099\/jmm.0.001581","type":"journal-article","created":{"date-parts":[[2022,8,17]],"date-time":"2022-08-17T14:16:59Z","timestamp":1660745819000},"source":"Crossref","is-referenced-by-count":24,"title":["Identification and antimicrobial susceptibility of referred Nocardia isolates in Victoria, Australia 2009\u20132019"],"prefix":"10.1099","volume":"71","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6145-5840","authenticated-orcid":false,"given":"Kim","family":"Yeoh","sequence":"first","affiliation":[{"name":"Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"},{"name":"Department of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maria","family":"Globan","sequence":"additional","affiliation":[{"name":"Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Phillip","family":"Naimo","sequence":"additional","affiliation":[{"name":"Department of General Medicine, The Royal Melbourne Hospital, 300 Grattan Street, Parkville, 3050, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7363-6665","authenticated-orcid":false,"given":"Deborah A.","family":"Williamson","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"},{"name":"Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kerrie","family":"Lea","sequence":"additional","affiliation":[{"name":"Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katherine","family":"Bond","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"},{"name":"Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, 3000, Victoria, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"345","reference":[{"key":"R1","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.19.2.259-282.2006"},{"key":"R2","doi-asserted-by":"publisher","DOI":"10.1093\/clinids\/22.6.891"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.7.2.213"},{"key":"R4","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01868-19"},{"key":"R5","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkw489"},{"key":"R6","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciw241"},{"key":"R7","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2020.12.019"},{"key":"R8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgar.2019.06.018"},{"key":"R9","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2018.06.013"},{"key":"R10","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofw208"},{"key":"R11","doi-asserted-by":"publisher","DOI":"10.1111\/imj.14068"},{"key":"R12","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.30.11.2934-2937.1992"},{"key":"R13","volume-title":"CLSI Document M24","year":"2018"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01531-13"},{"key":"R15","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2018.12.007"},{"key":"R16","doi-asserted-by":"publisher","DOI":"10.1086\/657399"},{"key":"R17","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01073-10"},{"key":"R18","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.43.6.2624-2628.2005"},{"key":"R19","volume-title":"Therapeutic Guidelines: Antibiotic","year":"2019"},{"key":"R20","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.35.4.847-852.1997"},{"key":"R21","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00994-11"},{"key":"R22","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.06243-11"},{"key":"R23","doi-asserted-by":"publisher","DOI":"10.1016\/s0732-8893(96)00178-2"},{"key":"R24","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.37.9.1850"},{"key":"R25","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/156.6.959"},{"key":"R26","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.14.5.704"},{"key":"R27","volume-title":"Therapeutic Guidelines: Antibiotic","year":"2014"},{"key":"R28","volume-title":"Treatment of Nocardiosis. UpToDate","author":"Spelman","year":"2021"},{"key":"R29","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2019.10.032"},{"key":"R30","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.45.4.1295-1297.2001"},{"key":"R31","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2014.08.010"},{"key":"R32","doi-asserted-by":"publisher","DOI":"10.1086\/345907"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofaa090"}],"container-title":["Journal of Medical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/jmm\/10.1099\/jmm.0.001581?crawler=true&mimetype=application\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,12,14]],"date-time":"2023-12-14T19:35:37Z","timestamp":1702582537000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/jmm\/10.1099\/jmm.0.001581"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,9,12]]},"references-count":33,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2022,9,12]]}},"URL":"https:\/\/doi.org\/10.1099\/jmm.0.001581","relation":{},"ISSN":["0022-2615","1473-5644"],"issn-type":[{"value":"0022-2615","type":"print"},{"value":"1473-5644","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,9,12]]}}}