{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,14]],"date-time":"2026-10-14T21:47:40Z","timestamp":1792014460813,"version":"4.4.0"},"reference-count":46,"publisher":"Microbiology Society","issue":"2","license":[{"start":{"date-parts":[[2019,2,1]],"date-time":"2019-02-01T00:00:00Z","timestamp":1548979200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,2,1]]},"abstract":"<jats:p>We present the LiSEQ (<jats:named-content content-type=\"genus\">\n                     <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.5095\" xlink:type=\"simple\">Listeria<\/jats:ext-link>\n                  <\/jats:named-content> SEQuencing) project, funded by the European Food Safety Agency (EFSA) to compare <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.5096\" xlink:type=\"simple\">Listeria monocytogenes<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> isolates collected in the European Union from ready-to-eat foods, compartments along the food chain (e.g. food-producing animals, food-processing environments) and humans. In this article, we report the molecular characterization of a selection of this data set employing whole-genome sequencing analysis. We present an overview of the strain diversity observed in different sampled sources, and characterize the isolates based on their virulence and resistance profile. We integrate into our analysis the global <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.5096\" xlink:type=\"simple\">L. monocytogenes<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> genome collection described by Moura and colleagues in 2016 to assess the representativeness of the LiSEQ collection in the context of known <jats:italic>\n                     <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.5096\" xlink:type=\"simple\">L. monocytogenes<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> strain diversity.<\/jats:p>","DOI":"10.1099\/mgen.0.000257","type":"journal-article","created":{"date-parts":[[2019,2,18]],"date-time":"2019-02-18T15:12:56Z","timestamp":1550502776000},"source":"Crossref","is-referenced-by-count":81,"title":["LiSEQ \u2013 whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe"],"prefix":"10.1099","volume":"5","author":[{"given":"Ana\u00efs","family":"Painset","sequence":"first","affiliation":[{"name":"1\u200bPublic Health England Gastrointestinal Bacteria Reference Unit, 61 Colindale Avenue, London, NW9 5EQ, UK"},{"name":"2\u200bNational Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Gastrointestinal Infections at University of Liverpool, Liverpool, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jonas T.","family":"Bj\u00f6rkman","sequence":"additional","affiliation":[{"name":"3\u200bStatens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kristoffer","family":"Kiil","sequence":"additional","affiliation":[{"name":"3\u200bStatens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laurent","family":"Guillier","sequence":"additional","affiliation":[{"name":"4\u200bMaisons-Alfort Laboratory for Food Safety, \n                     Salmonella\n                   and \n                     Listeria\n                   Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Fran\u00e7ois","family":"Mariet","sequence":"additional","affiliation":[{"name":"4\u200bMaisons-Alfort Laboratory for Food Safety, \n                     Salmonella\n                   and \n                     Listeria\n                   Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Benjamin","family":"F\u00e9lix","sequence":"additional","affiliation":[{"name":"4\u200bMaisons-Alfort Laboratory for Food Safety, \n                     Salmonella\n                   and \n                     Listeria\n                   Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Corinne","family":"Amar","sequence":"additional","affiliation":[{"name":"1\u200bPublic Health England Gastrointestinal Bacteria Reference Unit, 61 Colindale Avenue, London, NW9 5EQ, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ovidiu","family":"Rotariu","sequence":"additional","affiliation":[{"name":"5\u200bSchool of Biological Sciences, The University of Aberdeen, Cruickshank Building. 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