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The causal agent, \n \n Streptococcus equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> subspecies \n \n equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic>, establishes a persistent infection in approximately 10\u200a% of animals that recover from the acute disease. Such \u2018carrier\u2019 animals appear healthy and are rarely identified during routine veterinary examinations pre-purchase or transit, but can transmit \n \n S. equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> to na\u00efve animals initiating new episodes of disease. Here, we report the analysis and visualization of phylogenomic and epidemiological data for 670 isolates of \n \n S. equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> recovered from 19 different countries using a new core-genome multilocus sequence typing (cgMLST) web bioresource. Genetic relationships among all 670 S. \n \n equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> isolates were determined at high resolution, revealing national and international transmission events that drive this endemic disease in horse populations throughout the world. Our data argue for the recognition of the international importance of strangles by the Office International des \u00c9pizooties to highlight the health, welfare and economic cost of this disease. The Pathogenwatch cgMLST web bioresource described herein is available for tailored genomic analysis of populations of \n \n S. equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> and its close relative \n \n S. equi<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> subspecies \n \n zooepidemicus<\/jats:ext-link>\n <\/jats:named-content>\n <\/jats:italic> that are recovered from horses and other animals, including humans, throughout the world. 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