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However, studies documenting the epidemiology of\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    in South America using genomics are scarce. We hereby report on the largest genomic epidemiology study to date of both methicillin-resistant\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    (MRSA) and methicillin-susceptible\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    (MSSA) in South America, conducted by the StaphNET-SA network. We characterised 404 genomes recovered from a prospective observational study of\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    bacteraemia in 58 hospitals from Argentina, Bolivia, Brazil, Paraguay and Uruguay between April and October 2019. We show that a minority of\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    isolates are phenotypically multi-drug resistant (5.2%), but more than a quarter are resistant to macrolide\u2013lincosamide\u2013streptogramin B (MLSb). MSSA were more genetically diverse than MRSA. Lower rates of associated antimicrobial resistance in community-associated(CA)-MRSA versus hospital-associated (HA)-MRSA were found in association with three\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    genotypes dominating the MRSA population: CC30-MRSA-IVc-\n                    <jats:italic>t019-lukS\/F-PV+<\/jats:italic>\n                    , CC5-MRSA-IV-\n                    <jats:italic>t002-lukS\/F-PV-<\/jats:italic>\n                    and CC8-MRSA-IVc-\n                    <jats:italic>t008-lukS\/F-PV+<\/jats:italic>\n                    -COMER+. These are historically from a CA origin, carry on average fewer antimicrobial resistance determinants, and often lack key virulence genes. Surprisingly, CC398-MSSA-\n                    <jats:italic>t1451-lukS\/F-PV-<\/jats:italic>\n                    related to the CC398 human-associated lineage is widely disseminated throughout the region, and is described here for the first time as the most prevalent MSSA lineage in South America. Moreover, CC398 strains carrying\n                    <jats:italic>ermT<\/jats:italic>\n                    (largely responsible for the MLSb resistance rates of MSSA strains: inducible iMLSb phenotype) and\n                    <jats:italic>sh_fabI<\/jats:italic>\n                    (related to triclosan resistance) were recovered from both CA and HA origin. The frequency of MRSA and MSSA lineages differed between countries but the most prevalent\n                    <jats:italic>\n                      <jats:named-content content-type=\"species\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.11043\" xlink:type=\"simple\">S. aureus<\/jats:ext-link>\n                      <\/jats:named-content>\n                    <\/jats:italic>\n                    genotypes are high-risk clones widely distributed in the South American region without a clear country-specific phylogeographical structure. Therefore, our findings underline the need for continuous genomic surveillance by regional networks such as StaphNET-SA. This article contains data hosted by Microreact.\n                  <\/jats:p>","DOI":"10.1099\/mgen.0.001020","type":"journal-article","created":{"date-parts":[[2023,5,25]],"date-time":"2023-05-25T10:17:59Z","timestamp":1685009879000},"source":"Crossref","is-referenced-by-count":16,"title":["Genomic epidemiology of Staphylococcus aureus isolated from bloodstream infections in South America during 2019 supports regional surveillance"],"prefix":"10.1099","volume":"9","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3787-3318","authenticated-orcid":false,"given":"Sabrina","family":"Di Gregorio","sequence":"first","affiliation":[{"name":"Instituto de Investigaciones en Bacteriolog\u00eda y Virolog\u00eda Molecular (IBaViM), Facultad de Farmacia y Bioqu\u00edmica, Universidad de Buenos Aires, Ciudad Aut\u00f3noma de Buenos Aires, Argentina"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jes\u00fas","family":"Vielma","sequence":"additional","affiliation":[{"name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Ciudad Aut\u00f3noma de Buenos Aires, Argentina"},{"name":"Instituto de Investigaciones en Bacteriolog\u00eda y Virolog\u00eda Molecular (IBaViM), Facultad de Farmacia y Bioqu\u00edmica, Universidad de Buenos Aires, Ciudad Aut\u00f3noma de Buenos Aires, Argentina"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0118-1996","authenticated-orcid":false,"given":"Mar\u00eda Sol","family":"Haim","sequence":"additional","affiliation":[{"name":"Unidad Operativa Centro Nacional de Gen\u00f3mica y Bioinform\u00e1tica, ANLIS Dr. Carlos G. 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