{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T09:01:02Z","timestamp":1786438862563,"version":"build-2736575974"},"reference-count":66,"publisher":"Microbiology Society","issue":"1","license":[{"start":{"date-parts":[[2024,1,3]],"date-time":"2024-01-03T00:00:00Z","timestamp":1704240000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"the National Key R&D Program of China","award":["2020YFF0305002"],"award-info":[{"award-number":["2020YFF0305002"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,1,3]]},"abstract":"<jats:p>Pet turtles are a well-recognized source of human salmonellosis, posing a threat to human health, particularly children who commonly keep pet turtles. To date, the genomic characteristics of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> among pet turtles and children has not been well described. We investigated the prevalence, antimicrobial resistance (AMR) and genomic characteristics of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> from pet turtles in Beijing, China. In total, 9.6\u200a% (46\/480) of pet turtles were positive for <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> with <jats:italic>S<\/jats:italic>. Thompson being the dominant serovar (19\/46) in 2019. Moreover, 80.4\u200a% of <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> were multi-drug resistant (MDR) and 60.7\u200a% were resistant to ampicillin, streptomycin, sulfonamides and tetracycline (ASSuT). We further compared the genomes of <jats:italic>S<\/jats:italic>. Thompson isolates from pet turtles (<jats:italic>n<\/jats:italic>=19) with those from children with diarrhoea (<jats:italic>n<\/jats:italic>=28) in the same region and year, most of which were sequence type (ST)26, with one novel ST7937 identified from a child-associated isolate. <jats:italic>S<\/jats:italic>. Thompson isolates from children with diarrhoea exhibited less resistance than isolates from pet turtles. Most MDR isolates possessed multiple AMR genes, including the AmpC \u03b2-lactamase-encoding genes <jats:italic>bla<\/jats:italic>\n                  <jats:sub>DHA-15<\/jats:sub> and <jats:italic>bla<\/jats:italic>\n                  <jats:sub>DHA-1<\/jats:sub> which co-occurred with the IncA\/C and IncHI plasmid replicon types. To the best of our knowledge, this is the first time that the <jats:italic>bla<\/jats:italic>\n                  <jats:sub>DHA-15<\/jats:sub> gene has been detected from <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic>. Several pet turtle-associated <jats:italic>S<\/jats:italic>. Thompson isolates comprised phylogenetically close clusters with those from children with diarrhoea (&lt;20 SNP differences). Bayesian analysis demonstrated that the Chinese ST26 <jats:italic>S<\/jats:italic>. Thompson strains had a recent evolutionary history and evolved into two major clades, with one clade acquiring various resistant plasmids. Our findings revealed the emergence of MDR <jats:italic>\n                     <jats:named-content content-type=\"genus\">\n                        <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/doi.org\/10.1601\/nm.3291\" xlink:type=\"simple\">Salmonella<\/jats:ext-link>\n                     <\/jats:named-content>\n                  <\/jats:italic> among pet turtles in China and provided evidence for the interspecies transmission of <jats:italic>S<\/jats:italic>. Thompson.<\/jats:p>","DOI":"10.1099\/mgen.0.001164","type":"journal-article","created":{"date-parts":[[2024,1,3]],"date-time":"2024-01-03T16:17:50Z","timestamp":1704298670000},"source":"Crossref","is-referenced-by-count":5,"title":["Emergence and genomic characteristics of multi-drug-resistant Salmonella in pet turtles and children with diarrhoea"],"prefix":"10.1099","volume":"10","author":[{"given":"Wei","family":"Wang","sequence":"first","affiliation":[{"name":"Division IV of Food Safety Standards, China National Center for Food Safety Risk Assessment, Beijing, PR China"},{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Feng","family":"Liu","sequence":"additional","affiliation":[{"name":"Pharmaceutical Department, Qingdao Traditional Chinese Medicine Hospital (Qingdao Hiser Hospital), Qingdao Hiser Hospital Affiliated of Qingdao University, Qingdao, Shandong, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hui","family":"Li","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Menghan","family":"Li","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yujie","family":"Hu","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fengqin","family":"Li","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"Xiao","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"},{"name":"Division IV of Food Safety Standards, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9092-882X","authenticated-orcid":false,"given":"Yinping","family":"Dong","sequence":"additional","affiliation":[{"name":"NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"345","reference":[{"key":"R1","doi-asserted-by":"publisher","DOI":"10.1086\/650733"},{"key":"R2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2014.00391"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2020.00497"},{"key":"R4","doi-asserted-by":"publisher","DOI":"10.1016\/j.micinf.2005.12.019"},{"key":"R5","doi-asserted-by":"publisher","DOI":"10.3390\/ijms22115905"},{"key":"R6","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10040780"},{"key":"R7","doi-asserted-by":"publisher","DOI":"10.1099\/jmm.0.012146-0"},{"key":"R8","doi-asserted-by":"publisher","DOI":"10.1086\/381594"},{"key":"R9","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2015.2107"},{"key":"R10","doi-asserted-by":"publisher","DOI":"10.1542\/peds.2015-1735"},{"key":"R11","doi-asserted-by":"publisher","DOI":"10.1086\/649932"},{"key":"R12","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0072350"},{"key":"R13","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/cis051"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1111\/cobi.12240"},{"key":"R15","doi-asserted-by":"publisher","DOI":"10.15585\/mmwr.mm6429a7"},{"key":"R16","doi-asserted-by":"publisher","DOI":"10.1017\/s0022172400017514"},{"key":"R17","doi-asserted-by":"publisher","DOI":"10.4178\/epih.e2019002"},{"key":"R18","doi-asserted-by":"publisher","DOI":"10.2185\/jrm.2021-007"},{"key":"R19","doi-asserted-by":"publisher","DOI":"10.1542\/peds.2009-0272"},{"key":"R20","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0235291"},{"key":"R21","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00092-20"},{"key":"R22","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.69.1.290-296.2003"},{"key":"R23","doi-asserted-by":"publisher","DOI":"10.1016\/j.resmic.2004.04.005"},{"key":"R24","volume-title":"CLSI Supplement M100","year":"2020"},{"key":"R25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"R26","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"R27","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"R28","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00483-19"},{"key":"R29","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000206"},{"key":"R30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr039"},{"key":"R31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv421"},{"key":"R32","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa131"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.7717\/peerj-cs.20"},{"key":"R34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz239"},{"key":"R35","doi-asserted-by":"publisher","DOI":"10.1093\/ve\/vey016"},{"key":"R36","doi-asserted-by":"publisher","DOI":"10.1093\/ve\/vew007"},{"key":"R37","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2148-7-214"},{"key":"R38","doi-asserted-by":"publisher","DOI":"10.1080\/21645515.2018.1504717"},{"key":"R39","doi-asserted-by":"publisher","DOI":"10.5625\/lar.2016.32.3.166"},{"key":"R40","doi-asserted-by":"publisher","DOI":"10.1638\/2020-0061"},{"key":"R41","doi-asserted-by":"publisher","DOI":"10.14202\/vetworld.2021.222-229"},{"key":"R42","doi-asserted-by":"publisher","DOI":"10.3389\/fvets.2021.581946"},{"key":"R43","doi-asserted-by":"publisher","DOI":"10.3201\/eid2207.150685"},{"key":"R44","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.141975"},{"key":"R45","doi-asserted-by":"publisher","DOI":"10.5625\/lar.2017.33.2.49"},{"key":"R46","doi-asserted-by":"publisher","DOI":"10.1007\/BF00871814"},{"key":"R47","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02770-13"},{"key":"R48","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2016.2156"},{"key":"R49","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00680"},{"key":"R50","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1007261"},{"key":"R51","doi-asserted-by":"publisher","DOI":"10.3390\/vetsci9070349"},{"key":"R52","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.01482"},{"key":"R53","first-page":"4","article-title":"Preliminary observations of a large Turtle farm in Hainan province, people\u2019s Republic of China","volume":"3","author":"Shi","year":"2001","journal-title":"Turtle and Tortoise Newsletter"},{"key":"R54","doi-asserted-by":"publisher","DOI":"10.1017\/S0030605308000562"},{"key":"R55","doi-asserted-by":"publisher","DOI":"10.1016\/j.eng.2022.05.006"},{"key":"R56","doi-asserted-by":"publisher","DOI":"10.1016\/j.healthpol.2008.09.002"},{"key":"R57","doi-asserted-by":"publisher","DOI":"10.3389\/fvets.2022.912693"},{"key":"R58","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkx488"},{"key":"R59","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-013-0471-x"},{"key":"R60","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2334-14-454"},{"key":"R61","doi-asserted-by":"publisher","DOI":"10.1099\/jmm.0.040691-0"},{"key":"R62","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/39.1.85"},{"key":"R63","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02000-20"},{"key":"R64","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00464-16"},{"key":"R65","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S230604"},{"key":"R66","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms8030407"}],"container-title":["Microbial Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/mgen\/10.1099\/mgen.0.001164?crawler=true&mimetype=application\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,1,3]],"date-time":"2024-01-03T16:18:02Z","timestamp":1704298682000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/mgen\/10.1099\/mgen.0.001164"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1,3]]},"references-count":66,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2024,1,3]]}},"URL":"https:\/\/doi.org\/10.1099\/mgen.0.001164","relation":{},"ISSN":["2057-5858"],"issn-type":[{"value":"2057-5858","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,1,3]]}}}