{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T23:49:33Z","timestamp":1787010573887,"version":"build-2736575974"},"reference-count":104,"publisher":"Microbiology Society","issue":"7","license":[{"start":{"date-parts":[[2024,7,19]],"date-time":"2024-07-19T00:00:00Z","timestamp":1721347200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"crossref","award":["R35GM142924"],"award-info":[{"award-number":["R35GM142924"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,7,19]]},"abstract":"<jats:p>\n                    Consumption of raw, undercooked or contaminated animal food products is a frequent cause of\n                    <jats:italic>Campylobacter jejuni<\/jats:italic>\n                    infection. Brazil is the world\u2019s third largest producer and a major exporter of chicken meat, yet population-level genomic investigations of\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    in the country remain scarce. Analysis of 221\n                    <jats:italic>C<\/jats:italic>\n                    .\n                    <jats:italic>jejuni<\/jats:italic>\n                    genomes from Brazil shows that the overall core and accessory genomic features of\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    are influenced by the identity of the human or animal source. Of the 60 sequence types detected, ST353 is the most prevalent and consists of samples from chicken and human sources. Notably, we identified the presence of diverse\n                    <jats:italic>bla<\/jats:italic>\n                    genes from the OXA-61 and OXA-184 families that confer beta-lactam resistance as well as the operon\n                    <jats:italic>cmeABCR<\/jats:italic>\n                    related to multidrug efflux pump, which contributes to resistance against tetracyclines, macrolides and quinolones. Based on limited data, we estimated the most recent common ancestor of ST353 to the late 1500s, coinciding with the time the Portuguese first arrived in Brazil and introduced domesticated chickens into the country. We identified at least two instances of ancestral chicken-to-human infections in ST353. The evolution of\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    in Brazil was driven by the confluence of clinically relevant genetic elements, multi-host adaptation and clonal population growth that coincided with major socio-economic changes in poultry farming.\n                  <\/jats:p>","DOI":"10.1099\/mgen.0.001274","type":"journal-article","created":{"date-parts":[[2024,7,19]],"date-time":"2024-07-19T12:17:00Z","timestamp":1721391420000},"source":"Crossref","is-referenced-by-count":5,"title":["Five centuries of genome evolution and multi-host adaptation of Campylobacter jejuni in Brazil"],"prefix":"10.1099","volume":"10","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9212-8607","authenticated-orcid":false,"given":"Ana Beatriz Garcez","family":"Buiatte","sequence":"first","affiliation":[{"name":"Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA"},{"name":"Molecular Epidemiology Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4207-8231","authenticated-orcid":false,"given":"Stephanie S. R.","family":"Souza","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8316-6724","authenticated-orcid":false,"given":"Leticia Roberta Martins","family":"Costa","sequence":"additional","affiliation":[{"name":"Molecular Epidemiology Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6796-2632","authenticated-orcid":false,"given":"Phelipe Augusto Borba Martins","family":"Peres","sequence":"additional","affiliation":[{"name":"Nanobiotechnology Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8265-5163","authenticated-orcid":false,"given":"Roberta Torres","family":"de Melo","sequence":"additional","affiliation":[{"name":"Molecular Epidemiology Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1882-4158","authenticated-orcid":false,"given":"Simone","family":"Sommerfeld","sequence":"additional","affiliation":[{"name":"Infectious Disease Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8485-078X","authenticated-orcid":false,"given":"Belchiolina Beatriz","family":"Fonseca","sequence":"additional","affiliation":[{"name":"Infectious Disease Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicole I.","family":"Zac Soligno","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3738-4584","authenticated-orcid":false,"given":"Odion O.","family":"Ikhimiukor","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5438-8042","authenticated-orcid":false,"given":"Paulo Marcel","family":"Armendaris","sequence":"additional","affiliation":[{"name":"Federal Agriculture Defense Laboratory\/RS - LFDA\/RS, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4428-0924","authenticated-orcid":false,"given":"Cheryl P.","family":"Andam","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2003-696X","authenticated-orcid":false,"given":"Daise Aparecida","family":"Rossi","sequence":"additional","affiliation":[{"name":"Molecular Epidemiology Laboratory, Federal University of Uberl\u00e2ndia, Uberl\u00e2ndia, Minas Gerais, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"345","reference":[{"key":"R1","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00006-15"},{"key":"R2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2022.979055"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-018-0037-9"},{"key":"R4","doi-asserted-by":"publisher","DOI":"10.1016\/j.rvsc.2020.05.017"},{"key":"R5","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2020.09.039"},{"key":"R6","doi-asserted-by":"publisher","DOI":"10.1128\/9781555815554"},{"key":"R7","doi-asserted-by":"publisher","DOI":"10.1097\/QCO.0000000000000570"},{"key":"R8","doi-asserted-by":"publisher","DOI":"10.1128\/9781555819804.ch14"},{"key":"R9","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(21)00517-1"},{"key":"R10","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2019.2652"},{"key":"R11","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.001012"},{"key":"R12","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1009436"},{"key":"R13","doi-asserted-by":"publisher","DOI":"10.1089\/omi.2015.0046"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1128\/aac.01687-21"},{"key":"R15","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-89683-6"},{"key":"R16","volume-title":"The Saga of the Brazilian Poultry Industry - How Brazil has Become the World\u2019s Largest Exporter of Chicken Meat","author":"Costa","year":"2011"},{"key":"R17","doi-asserted-by":"publisher","DOI":"10.53077\/haal.v3i02.127"},{"key":"R18","article-title":"Banco de dados de surtos de DTHA (2000 a 2022) (Foodborne disease outbreak database - 2000 to 2022)","year":"2023"},{"key":"R19","doi-asserted-by":"publisher","DOI":"10.3201\/eid2611.200127"},{"key":"R20","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.01187-22"},{"key":"R21","article-title":"Guillain-Barr\u00e9 syndrome \u2013 Peru"},{"key":"R22","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0008533"},{"key":"R23","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2017.12.026"},{"key":"R24","doi-asserted-by":"publisher","DOI":"10.1590\/S1678-9946201759077"},{"key":"R25","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2019.03.009"},{"key":"R26","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-021-02478-w"},{"key":"R27","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"R28","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt086"},{"key":"R29","doi-asserted-by":"publisher","DOI":"10.1101\/gr.186072.114"},{"key":"R30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"R31","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-07641-9"},{"key":"R32","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0506758102"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-02090-4"},{"key":"R34","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-62703-646-7_10"},{"key":"R35","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000056"},{"key":"R36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu033"},{"key":"R37","first-page":"57","volume-title":"American Mathematical Society: Lectures on Mathematics in the Life Sciences","author":"Tavar\u00e9","year":"1986"},{"key":"R38","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab301"},{"key":"R39","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz361"},{"key":"R40","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.39.1.14-23.2001"},{"key":"R41","doi-asserted-by":"publisher","DOI":"10.12688\/wellcomeopenres.14826.1"},{"key":"R42","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-91456-0"},{"key":"R43","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac920"},{"key":"R44","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab1107"},{"key":"R45","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1196"},{"key":"R46","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky783"},{"key":"R47","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa193"},{"key":"R48","doi-asserted-by":"publisher","DOI":"10.1111\/1467-9868.00353"},{"key":"R49","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v040.i03"},{"key":"R50","first-page":"7","article-title":"CODA: convergence diagnosis and output analysis for MCMC","volume":"6","author":"Plummer","year":"2006","journal-title":"R News"},{"key":"R51","doi-asserted-by":"publisher","DOI":"10.1214\/ss\/1177011136"},{"key":"R52","doi-asserted-by":"publisher","DOI":"10.1080\/10618600.1998.10474787"},{"key":"R53","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syab095"},{"key":"R54","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syy007"},{"key":"R55","doi-asserted-by":"publisher","DOI":"10.1093\/genetics\/98.3.625"},{"key":"R56","doi-asserted-by":"publisher","DOI":"10.21105\/joss.03167"},{"key":"R57","article-title":"RStudio: integrated development for R"},{"key":"R58","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-023-12456-w"},{"key":"R59","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M401134200"},{"key":"R60","doi-asserted-by":"publisher","DOI":"10.1128\/JB.186.11.3296-3303.2004"},{"key":"R61","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.2000.02020.x"},{"key":"R62","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-21438-2"},{"key":"R63","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2672.2009.04444.x"},{"key":"R64","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.46.7.2124-2131.2002"},{"key":"R65","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01655-08"},{"key":"R66","doi-asserted-by":"publisher","DOI":"10.1093\/emboj\/cdg093"},{"key":"R67","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms8111710"},{"key":"R68","doi-asserted-by":"publisher","DOI":"10.1128\/mr.57.1.138-163.1993"},{"key":"R69","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.1994.tb07000.x"},{"key":"R70","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00149-09"},{"key":"R71","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.46.8.2644-2647.2002"},{"key":"R72","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.49.7.2753-2759.2005"},{"key":"R73","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00616-06"},{"key":"R74","volume-title":"Chapters of Brazil\u2019s Colonial History, 1500-1800","author":"Abreau","year":"1997"},{"key":"R75","doi-asserted-by":"publisher","DOI":"10.1016\/j.oregeorev.2022.105005"},{"key":"R76","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1009829"},{"key":"R77","doi-asserted-by":"publisher","DOI":"10.1007\/s11033-019-05174-y"},{"key":"R78","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2020.0184"},{"key":"R79","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2021.105018"},{"key":"R80","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.02659-22"},{"key":"R81","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00124-10"},{"key":"R82","doi-asserted-by":"publisher","DOI":"10.1111\/mec.12742"},{"key":"R83","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2015.149"},{"key":"R84","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0226238"},{"key":"R85","doi-asserted-by":"publisher","DOI":"10.3382\/ps\/pey219"},{"key":"R86","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.02432"},{"key":"R87","doi-asserted-by":"publisher","DOI":"10.1111\/jam.13185"},{"key":"R88","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-015-0853-3"},{"key":"R89","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0246571"},{"key":"R90","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2024.105578"},{"key":"R91","doi-asserted-by":"publisher","DOI":"10.1111\/jam.15753"},{"key":"R92","doi-asserted-by":"publisher","DOI":"10.1097\/JOM.0b013e31820805d5"},{"key":"R93","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0143587"},{"key":"R94","doi-asserted-by":"publisher","DOI":"10.1292\/jvms.20-0522"},{"key":"R95","doi-asserted-by":"publisher","DOI":"10.1136\/jnnp.61.3.279"},{"key":"R96","doi-asserted-by":"publisher","DOI":"10.1007\/s00430-011-0220-3"},{"key":"R97","volume-title":"Forma\u00e7\u00e3o Econ\u00f4mica Do Brasil","author":"Furtado","year":"2005"},{"key":"R98","doi-asserted-by":"publisher","DOI":"10.1128\/9781555817534"},{"key":"R99","doi-asserted-by":"publisher","DOI":"10.3390\/ani10040552"},{"key":"R100","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1917168117"},{"key":"R101","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2307773120"},{"key":"R102","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2211217119"},{"key":"R103","doi-asserted-by":"publisher","DOI":"10.1111\/1574-6968.12488"},{"key":"R104","doi-asserted-by":"publisher","DOI":"10.1016\/j.prevetmed.2010.07.003"}],"container-title":["Microbial Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/mgen\/10.1099\/mgen.0.001274?crawler=true&mimetype=application\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,19]],"date-time":"2024-07-19T12:17:07Z","timestamp":1721391427000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.microbiologyresearch.org\/content\/journal\/mgen\/10.1099\/mgen.0.001274"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,7,19]]},"references-count":104,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2024,7,19]]}},"URL":"https:\/\/doi.org\/10.1099\/mgen.0.001274","relation":{},"ISSN":["2057-5858"],"issn-type":[{"value":"2057-5858","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,7,19]]}}}