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We used whole-genome sequencing to compare\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    from bird faeces collected in cherry orchards in Michigan to 214 clinical isolates from Michigan patients and 1,286 published bird-derived\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    genomes. The bird isolates from Michigan possess class D \u03b2-lactamases and multiple virulence genes and belong to seven sequence types (STs), including three novel STs. Two isolates obtained from different bird species differed by only a single core-genome SNP despite being collected on different days, while a genetically similar lineage was observed in American robins sampled a year apart. Although the bird- and human-derived strains cluster within a core gene phylogeny, they differ by &gt;4,000\u2009core-genome SNPs. Relative to 1,286 genomes, Michigan bird isolates do not form a single cluster but are distributed throughout the core gene multilocus sequence typing tree. Analysis of shared STs identified genomes from dogs, water, chickens and human clinical infections that differ from Michigan bird isolates by only 10\u201338 core-genome SNPs. These findings demonstrate that Michigan birds harbour diverse\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    lineages, with some belonging to widely distributed genotypes that are related to isolates from different bird species, host types and geographic locations. Although the substantial genomic separation between Michigan bird and human isolates indicates that they are not related, they were collected during different time periods and geographic locations, thereby limiting our ability to make comparisons. Improving understanding of the diversity, host range and transmission dynamics of wildlife-associated\n                    <jats:italic>C. jejuni<\/jats:italic>\n                    lineages is critical for strengthening source attribution studies and guiding food safety policy in agroecosystems.\n                  <\/jats:p>","DOI":"10.1099\/mgen.0.001868","type":"journal-article","created":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T15:16:48Z","timestamp":1792768608000},"source":"Crossref","is-referenced-by-count":0,"title":["Genomic diversity, host associations and ecology of Campylobacter jejuni recovered from wild birds in Michigan crop production systems"],"prefix":"10.1099","volume":"12","author":[{"given":"Olivia M.","family":"Smith","sequence":"first","affiliation":[{"name":"Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI, USA"},{"name":"Department of Integrative Biology, Michigan State University, East Lansing, MI, USA"},{"name":"Present address: Department of Horticulture, Michigan State University, East Lansing, MI, USA"},{"name":"Center for Global Change and Earth Observations, Michigan State University, East Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Karla A.","family":"Vasco","sequence":"additional","affiliation":[{"name":"Michigan Department of Health and Human Services, Bureau of Laboratories, Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6528-2094","authenticated-orcid":false,"given":"Danielle E.","family":"Gregory","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6202-0221","authenticated-orcid":false,"given":"Jose A.","family":"Rodrigues","sequence":"additional","affiliation":[{"name":"Present address: Department of Pediatrics, NewYork-Presbyterian Morgan Stanley Children\u2019s Hospital, Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York City, NY, USA"},{"name":"Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5826-0671","authenticated-orcid":false,"given":"Samantha","family":"Carbonell","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah","family":"Groendyk","sequence":"additional","affiliation":[{"name":"Department of Integrative Biology, Michigan State University, East Lansing, MI, USA"},{"name":"Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pedro A. 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