{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"bioRxiv"}],"indexed":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T18:37:37Z","timestamp":1768502257318,"version":"3.49.0"},"posted":{"date-parts":[[2023,1,27]]},"group-title":"Bioinformatics","reference-count":84,"publisher":"openRxiv","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2023,1,27]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                <jats:p>Existing phenotype ontologies were originally developed to represent phenotypes that manifest as a character state in relation to a wild-type or other reference. However, these do not include the phenotypic trait or attribute categories required for the annotation of genome-wide association studies (GWAS), Quantitative Trait Loci (QTL) mappings or any population-focused measurable trait data. Moreover, variations in gene expression in response to environmental disturbances even without any genetic alterations can also be associated with particular biological attributes. The integration of trait and biological attribute information with an ever increasing body of chemical, environmental and biological data greatly facilitates computational analyses and it is also highly relevant to biomedical and clinical applications.<\/jats:p>\n                <jats:p>The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. OBA has a modular design which provides several benefits for users and data integrators, including an automated and meaningful classification of trait terms computed on the basis of logical inferences drawn from domain-specific ontologies for cells, anatomical and other relevant entities. The logical axioms in OBA also provide a previously missing bridge that can computationally link Mendelian phenotypes with GWAS and quantitative traits. The term components in OBA provide semantic links and enable knowledge and data integration across specialised research community boundaries, thereby breaking silos.<\/jats:p>","DOI":"10.1101\/2023.01.26.525742","type":"posted-content","created":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T20:35:32Z","timestamp":1674851732000},"source":"Crossref","is-referenced-by-count":0,"title":["The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences"],"prefix":"10.64898","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8314-2140","authenticated-orcid":false,"given":"Ray","family":"Stefancsik","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8688-6599","authenticated-orcid":false,"given":"James P.","family":"Balhoff","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2699-3066","authenticated-orcid":false,"given":"Meghan A.","family":"Balk","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7335-3339","authenticated-orcid":false,"given":"Robyn","family":"Ball","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4606-0597","authenticated-orcid":false,"given":"Susan M.","family":"Bello","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6523-4866","authenticated-orcid":false,"given":"Anita R.","family":"Caron","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5642-5062","authenticated-orcid":false,"given":"Elissa","family":"Chessler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3961-0247","authenticated-orcid":false,"given":"Vinicius","family":"de Souza","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3245-2880","authenticated-orcid":false,"given":"Sarah","family":"Gehrke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9114-8737","authenticated-orcid":false,"given":"Melissa","family":"Haendel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laura W.","family":"Harris","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6315-3707","authenticated-orcid":false,"given":"Nomi L.","family":"Harris","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6757-4744","authenticated-orcid":false,"given":"Arwa","family":"Ibrahim","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5316-1399","authenticated-orcid":false,"given":"Sebastian","family":"Koehler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7356-1779","authenticated-orcid":false,"given":"Nicolas","family":"Matentzoglu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9353-5498","authenticated-orcid":false,"given":"Julie A.","family":"McMurry","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6601-2165","authenticated-orcid":false,"given":"Christopher J.","family":"Mungall","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8430-6039","authenticated-orcid":false,"given":"Monica C.","family":"Munoz-Torres","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4291-0737","authenticated-orcid":false,"given":"Tim","family":"Putman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0736-9199","authenticated-orcid":false,"given":"Peter","family":"Robinson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5836-9850","authenticated-orcid":false,"given":"Damian","family":"Smedley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1322-388X","authenticated-orcid":false,"given":"Elliot","family":"Sollis","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2908-3327","authenticated-orcid":false,"given":"Anne E","family":"Thessen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5208-3432","authenticated-orcid":false,"given":"Nicole","family":"Vasilevsky","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9848-6808","authenticated-orcid":false,"given":"David O.","family":"Walton","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7073-9172","authenticated-orcid":false,"given":"David","family":"Osumi-Sutherland","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"54368","reference":[{"key":"2023013110150592000_2023.01.26.525742v1.1","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1038\/s41684-021-00853-5","article-title":"Know Your Model: A brief history of making mutant mouse genetic models","volume":"50","year":"2021","journal-title":"Lab Anim"},{"key":"2023013110150592000_2023.01.26.525742v1.2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.05.010"},{"key":"2023013110150592000_2023.01.26.525742v1.3","doi-asserted-by":"publisher","DOI":"10.1101\/gad.342089.120"},{"key":"2023013110150592000_2023.01.26.525742v1.4","unstructured":"Alliance of Genome Resources Consortium. Harmonizing model organism data in the Alliance of Genome Resources. Genetics 220, (2022)."},{"key":"2023013110150592000_2023.01.26.525742v1.5","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa1083"},{"key":"2023013110150592000_2023.01.26.525742v1.6","doi-asserted-by":"publisher","DOI":"10.1007\/s00335-021-09932-x"},{"key":"2023013110150592000_2023.01.26.525742v1.7","doi-asserted-by":"crossref","first-page":"D1038","DOI":"10.1093\/nar\/gkac972","article-title":"The International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease","volume":"51","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.8","doi-asserted-by":"publisher","DOI":"10.1016\/j.gpb.2022.12.004"},{"key":"2023013110150592000_2023.01.26.525742v1.9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002195"},{"key":"2023013110150592000_2023.01.26.525742v1.10","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab1127"},{"key":"2023013110150592000_2023.01.26.525742v1.11","doi-asserted-by":"crossref","first-page":"e1008376","DOI":"10.1371\/journal.pcbi.1008376","article-title":"Transforming the study of organisms: Phenomic data models and knowledge bases","volume":"16","year":"2020","journal-title":"PLoS Comput. Biol"},{"key":"2023013110150592000_2023.01.26.525742v1.12","unstructured":"Rehm, H. L. et al. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genom 1, (2021)."},{"key":"2023013110150592000_2023.01.26.525742v1.13","doi-asserted-by":"crossref","first-page":"D977","DOI":"10.1093\/nar\/gkac1010","article-title":"The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource","volume":"51","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.14","doi-asserted-by":"crossref","first-page":"D1067","DOI":"10.1093\/nar\/gkac1007","article-title":"Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes","volume":"51","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.15","doi-asserted-by":"crossref","first-page":"1008728","DOI":"10.3389\/fvets.2022.1008728","article-title":"Vetinformatics from functional genomics to drug discovery: Insights into decoding complex molecular mechanisms of livestock systems in veterinary science","volume":"9","year":"2022","journal-title":"Front Vet Sci"},{"key":"2023013110150592000_2023.01.26.525742v1.16","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1038\/d41586-018-05771-0","article-title":"Pet genomics medicine runs wild","volume":"559","year":"2018","journal-title":"Nature"},{"key":"2023013110150592000_2023.01.26.525742v1.17","doi-asserted-by":"publisher","DOI":"10.1002\/wsbm.44"},{"key":"2023013110150592000_2023.01.26.525742v1.18","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa1043"},{"key":"2023013110150592000_2023.01.26.525742v1.19","doi-asserted-by":"crossref","first-page":"D1168","DOI":"10.1093\/nar\/gkx1152","article-title":"The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics","volume":"46","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.20","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1186\/s13326-016-0097-6","article-title":"The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation","volume":"7","year":"2016","journal-title":"J. Biomed. Semantics"},{"key":"2023013110150592000_2023.01.26.525742v1.21","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1077"},{"key":"2023013110150592000_2023.01.26.525742v1.22","doi-asserted-by":"publisher","DOI":"10.1111\/j.1439-0426.2012.01985.x"},{"key":"2023013110150592000_2023.01.26.525742v1.23","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0010708"},{"key":"2023013110150592000_2023.01.26.525742v1.24","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2012-13-1-r5"},{"key":"2023013110150592000_2023.01.26.525742v1.25","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0154556"},{"key":"2023013110150592000_2023.01.26.525742v1.26","doi-asserted-by":"publisher","DOI":"10.1186\/2041-1480-4-13"},{"key":"2023013110150592000_2023.01.26.525742v1.27","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq099"},{"key":"2023013110150592000_2023.01.26.525742v1.28","unstructured":"COB: An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO). (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.29","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-1-r2"},{"key":"2023013110150592000_2023.01.26.525742v1.30","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1000247"},{"key":"2023013110150592000_2023.01.26.525742v1.31","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1186\/s12859-022-04636-8","article-title":"The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development","volume":"23","year":"2022","journal-title":"BMC Bioinformatics"},{"key":"2023013110150592000_2023.01.26.525742v1.32","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2005-6-5-p8"},{"key":"2023013110150592000_2023.01.26.525742v1.33","doi-asserted-by":"crossref","first-page":"1008","DOI":"10.1093\/bib\/bbx035","article-title":"The anatomy of phenotype ontologies: principles, properties and applications","volume":"19","year":"2018","journal-title":"Brief. Bioinform"},{"key":"2023013110150592000_2023.01.26.525742v1.34","doi-asserted-by":"publisher","DOI":"10.1016\/j.websem.2008.05.001"},{"key":"2023013110150592000_2023.01.26.525742v1.35","first-page":"161","article-title":"Regular paths in SparQL: querying the NCI Thesaurus","volume":"2008","year":"2008","journal-title":"AMIA Annu. Symp. Proc"},{"key":"2023013110150592000_2023.01.26.525742v1.36","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s10817-013-9296-3","article-title":"The incredible ELK","volume":"53","year":"2014","journal-title":"J. Automat. Reason"},{"key":"2023013110150592000_2023.01.26.525742v1.37","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1186\/s12911-020-01336-2","article-title":"Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies","volume":"20","year":"2020","journal-title":"BMC Med. Inform. Decis. Mak"},{"key":"2023013110150592000_2023.01.26.525742v1.38","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/s13326-017-0126-0","article-title":"Dead simple OWL design patterns","volume":"8","year":"2017","journal-title":"J. Biomed. Semantics"},{"key":"2023013110150592000_2023.01.26.525742v1.39","unstructured":"OBO foundry. https:\/\/obofoundry.org\/principles\/fp-003-uris.html."},{"key":"2023013110150592000_2023.01.26.525742v1.40","unstructured":"dosdp-tools: Utility for working with DOSDP design patterns and OWL ontologies. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.41","unstructured":"src\/patterns\/dosdp-patterns at master \u00b7 obophenotype\/bio-attribute-ontology. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.42","unstructured":"oba_alignment.ipynb at master \u00b7 obophenotype\/bio-attribute-ontology. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.43","doi-asserted-by":"crossref","unstructured":"Matentzoglu, N. et al. A Simple Standard for Sharing Ontological Mappings (SSSOM). Database 2022, (2022).","DOI":"10.1093\/database\/baac035"},{"key":"2023013110150592000_2023.01.26.525742v1.44","unstructured":"Vasilevsky, N. et al. Mondo Disease Ontology: harmonizing disease concepts across the world. in CEUR Workshop Proceedings vol. 2807 (CEUR-WS, 2020)."},{"key":"2023013110150592000_2023.01.26.525742v1.45","doi-asserted-by":"crossref","unstructured":"Jackson, R. et al. OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database 2021, (2021).","DOI":"10.1093\/database\/baab069"},{"key":"2023013110150592000_2023.01.26.525742v1.46","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz997"},{"key":"2023013110150592000_2023.01.26.525742v1.47","doi-asserted-by":"crossref","unstructured":"Matentzoglu, N. et al. Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database 2022, (2022).","DOI":"10.1093\/database\/baac087"},{"key":"2023013110150592000_2023.01.26.525742v1.48","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1186\/s12859-019-3002-3","article-title":"ROBOT: A Tool for Automating Ontology Workflows","volume":"20","year":"2019","journal-title":"BMC Bioinformatics"},{"key":"2023013110150592000_2023.01.26.525742v1.49","unstructured":"bio-attribute-ontology. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.50","unstructured":"Motik, B. , Grau, B. C. & Horrocks, I. OWL 2 web ontology language profiles (second edition). https:\/\/www.w3.org\/TR\/owl2-profiles\/."},{"key":"2023013110150592000_2023.01.26.525742v1.51","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1186\/s13326-017-0172-7","article-title":"MIRO: guidelines for minimum information for the reporting of an ontology","volume":"9","year":"2018","journal-title":"J. Biomed. Semantics"},{"key":"2023013110150592000_2023.01.26.525742v1.52","unstructured":"dosdp-tools: Utility for working with DOSDP design patterns and OWL ontologies. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.53","doi-asserted-by":"crossref","first-page":"D1255","DOI":"10.1093\/nar\/gkab1063","article-title":"The Human Disease Ontology 2022 update","volume":"50","year":"2022","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.54","unstructured":"Balhoff, J. P. et al. Ubergraph: integrating OBO ontologies into a unified semantic graph. https:\/\/icbo-conference.github.io\/icbo2022\/papers\/ICBO-2022_paper_5005.pdf."},{"key":"2023013110150592000_2023.01.26.525742v1.55","first-page":"118","article-title":"A new Ontology Lookup Service at EMBL-EBI","volume":"2","year":"2015","journal-title":"SWAT4LS"},{"key":"2023013110150592000_2023.01.26.525742v1.56","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw918"},{"key":"2023013110150592000_2023.01.26.525742v1.57","doi-asserted-by":"publisher","DOI":"10.1145\/2757001.2757003"},{"key":"2023013110150592000_2023.01.26.525742v1.58","unstructured":"ontology-access-kit: Ontology Access Kit: A python library and command line application for working with ontologies. (Github)."},{"key":"2023013110150592000_2023.01.26.525742v1.59","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa1113"},{"key":"2023013110150592000_2023.01.26.525742v1.60","doi-asserted-by":"crossref","first-page":"D1353","DOI":"10.1093\/nar\/gkac1046","article-title":"The next-generation Open Targets Platform: reimagined, redesigned, rebuilt","volume":"51","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"2023013110150592000_2023.01.26.525742v1.61","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1021\/acs.chemrestox.0c00311","article-title":"New Associations between Drug-Induced Adverse Events in Animal Models and Humans Reveal Novel Candidate Safety Targets","volume":"34","year":"2021","journal-title":"Chem. Res. Toxicol"},{"key":"2023013110150592000_2023.01.26.525742v1.62","doi-asserted-by":"crossref","first-page":"105101","DOI":"10.1016\/j.isci.2022.105101","article-title":"A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data","volume":"25","year":"2022","journal-title":"iScience"},{"key":"2023013110150592000_2023.01.26.525742v1.63","doi-asserted-by":"crossref","unstructured":"Harper, L. et al. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database 2018, (2018).","DOI":"10.1093\/database\/bay088"},{"key":"2023013110150592000_2023.01.26.525742v1.64","doi-asserted-by":"crossref","first-page":"928837","DOI":"10.3389\/fnut.2022.928837","article-title":"Establishing a Common Nutritional Vocabulary - From Food Production to Diet","volume":"9","year":"2022","journal-title":"Front Nutr"},{"key":"2023013110150592000_2023.01.26.525742v1.65","doi-asserted-by":"crossref","first-page":"e0223984","DOI":"10.1371\/journal.pone.0223984","article-title":"Scientist and data architect collaborate to curate and archive an inner ear electrophysiology data collection","volume":"14","year":"2019","journal-title":"PLoS One"},{"key":"2023013110150592000_2023.01.26.525742v1.66","doi-asserted-by":"publisher","DOI":"10.3897\/BDJ.4.e7971"},{"issue":"6","key":"2023013110150592000_2023.01.26.525742v1.67","doi-asserted-by":"crossref","first-page":"577","DOI":"10.3233\/SW-150190","article-title":"TraitBank: Practical semantics for organism attribute data","volume":"7","year":"2016","journal-title":"Semantic Web"},{"key":"2023013110150592000_2023.01.26.525742v1.68","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-43997-6_44"},{"key":"2023013110150592000_2023.01.26.525742v1.69","doi-asserted-by":"crossref","first-page":"e1470","DOI":"10.7717\/peerj.1470","article-title":"Emerging semantics to link phenotype and environment","volume":"3","year":"2015","journal-title":"PeerJ"},{"key":"2023013110150592000_2023.01.26.525742v1.70","doi-asserted-by":"publisher","DOI":"10.5281\/zenodo.2382757"},{"key":"2023013110150592000_2023.01.26.525742v1.71","unstructured":"Ontology Xref Service. Unified phenotype ontology (uPheno2) < ontology lookup service < monarch initiative. https:\/\/ols.monarchinitiative.org\/ontologies\/upheno2."},{"key":"2023013110150592000_2023.01.26.525742v1.72","first-page":"87","article-title":"Three ontologies to define phenotype measurement data","volume":"3","year":"2012","journal-title":"Front. Genet"},{"key":"2023013110150592000_2023.01.26.525742v1.73","doi-asserted-by":"publisher","DOI":"10.1186\/2041-1480-4-26"},{"key":"2023013110150592000_2023.01.26.525742v1.74","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0089606"},{"key":"2023013110150592000_2023.01.26.525742v1.75","doi-asserted-by":"publisher","DOI":"10.1038\/nprot.2015.124"},{"key":"2023013110150592000_2023.01.26.525742v1.76","doi-asserted-by":"crossref","unstructured":"Bradford, Y. M. et al. Zebrafish information network, the knowledgebase for Danio rerio research. Genetics 220, (2022).","DOI":"10.1093\/genetics\/iyac016"},{"key":"2023013110150592000_2023.01.26.525742v1.77","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1093\/clinchem\/42.1.81","article-title":"Logical observation identifier names and codes (LOINC) database: a public use set of codes and names for electronic reporting of clinical laboratory test results","volume":"42","year":"1996","journal-title":"Clin. Chem"},{"key":"2023013110150592000_2023.01.26.525742v1.78","unstructured":"Meunier-Sala\u00fcn, M.-C. ATOL : Animal Trait Ontology for livestock. in Scientific Conference (unknown, 2015)."},{"key":"2023013110150592000_2023.01.26.525742v1.79","first-page":"lq008","article-title":"Multifunctional crop trait ontology for breeders\u2019 data: field book, annotation, data discovery and semantic enrichment of the literature","volume":"2010","year":"2010","journal-title":"AoB Plants"},{"key":"2023013110150592000_2023.01.26.525742v1.80","unstructured":"Alliance Bioversity-CIAT. Crop Ontology Curation tool. https:\/\/cropontology.org."},{"key":"2023013110150592000_2023.01.26.525742v1.81","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt266"},{"key":"2023013110150592000_2023.01.26.525742v1.82","doi-asserted-by":"crossref","first-page":"e1201","DOI":"10.7717\/peerj.1201","article-title":"Biological and ecological traits of marine species","volume":"3","year":"2015","journal-title":"PeerJ"},{"key":"2023013110150592000_2023.01.26.525742v1.83","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1016\/j.websem.2013.05.001","article-title":"Key choices in the design of Simple Knowledge Organization System (SKOS)","volume":"20","year":"2013","journal-title":"Journal of Web Semantics"},{"key":"2023013110150592000_2023.01.26.525742v1.84","doi-asserted-by":"crossref","unstructured":"Pek\u00e1r, S. et al. The World Spider Trait database: a centralized global open repository for curated data on spider traits. Database 2021, (2021).","DOI":"10.1093\/database\/baab064"}],"container-title":[],"original-title":[],"link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1101\/2023.01.26.525742","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T04:11:59Z","timestamp":1768450319000},"score":1,"resource":{"primary":{"URL":"http:\/\/biorxiv.org\/lookup\/doi\/10.1101\/2023.01.26.525742"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,1,27]]},"references-count":84,"URL":"https:\/\/doi.org\/10.1101\/2023.01.26.525742","relation":{"is-preprint-of":[{"id-type":"doi","id":"10.1007\/s00335-023-09992-1","asserted-by":"subject"}]},"subject":[],"published":{"date-parts":[[2023,1,27]]},"subtype":"preprint"}}