{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"medRxiv"}],"indexed":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T06:03:17Z","timestamp":1788242597248,"version":"build-2803163510"},"posted":{"date-parts":[[2024,1,30]]},"group-title":"Infectious Diseases (except HIV\/AIDS)","reference-count":43,"publisher":"openRxiv","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2024,1,30]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                <jats:p>Understanding the epidemiology and ecology of yellow fever in endemic regions is critical for preventing future outbreaks. Ghana is a high-risk country for yellow fever. In this study we estimate the epidemiology, ecological cycles, and areas at risk for yellow fever in Ghana based on historical outbreaks. We identify 2371 cases and 887 deaths (case fatality rate 37.4%) from yellow fever reported in Ghana from 1910 to 2022. Since implementation of routine childhood vaccination in 1992, the estimated mean annual number of cases decreased by 81% and the geographic distribution of yellow fever cases also changed. While there have been multiple large historical outbreaks of yellow fever in Ghana from the urban cycle, recent outbreaks have originated among unvaccinated nomadic groups in rural areas with the sylvatic\/savanna cycles. Using machine learning and an ecological niche modeling framework, we predict areas in Ghana that are similar to where prior yellow fever outbreaks have originated based on temperature, precipitation, landcover, elevation, and human population density. We find differences in predictions depending on the ecological cycles of outbreaks. Ultimately, these findings and methods could be used to inform further subnational risk assessments for yellow fever in Ghana and other high-risk countries.<\/jats:p>\n                <jats:sec>\n                  <jats:title>Author Summary<\/jats:title>\n                  <jats:p>Yellow fever is a viral hemorrhagic fever transmitted by mosquitoes in Africa and South America through different ecological transmission cycles. While West Africa has had the most cases of yellow fever, less is known about the epidemiology and ecology of yellow fever among countries in this region. Ghana has had multiple yellow fever outbreaks, including a recent outbreak in 2021-2022. In this study we estimate cases and deaths due to yellow fever in Ghana, compare the ecological cycles of outbreaks, and predict future areas at risk based on prior yellow fever cases and environmental conditions. We find that the populations at risk for yellow fever in Ghana have changed over the past century and that different ecological factors influence the risk of future emergence. Understanding these changes and the nuances of yellow fever epidemiology and ecology within countries will be important for future outbreak preparedness.<\/jats:p>\n                <\/jats:sec>","DOI":"10.1101\/2024.01.29.24301911","type":"posted-content","created":{"date-parts":[[2024,1,30]],"date-time":"2024-01-30T13:15:43Z","timestamp":1706620543000},"source":"Crossref","is-referenced-by-count":2,"title":["Yellow fever in Ghana: Predicting emergence and ecology from historical outbreaks"],"prefix":"10.64898","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9911-7839","authenticated-orcid":false,"given":"Seth D.","family":"Judson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ernest","family":"Kenu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Trevon","family":"Fuller","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Franklin","family":"Asiedu-Bekoe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alberta","family":"Biritwum-Nyarko","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lee F.","family":"Schroeder","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David W.","family":"Dowdy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"54368","reference":[{"key":"2024020110451112000_2024.01.29.24301911v1.1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jcv.2014.08.030"},{"key":"2024020110451112000_2024.01.29.24301911v1.2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1007355"},{"key":"2024020110451112000_2024.01.29.24301911v1.3","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PNTD.0008304"},{"key":"2024020110451112000_2024.01.29.24301911v1.4","unstructured":"Regional Committee for Africa. Progress report on the implementation of the regional strategy for health security and emergencies 2016\u20132020: information document. World Health Organization. Regional Office for Africa; 2019. Report No.: AFR\/RC69\/INF.DOC\/1. Available: https:\/\/apps.who.int\/iris\/handle\/10665\/331442"},{"key":"2024020110451112000_2024.01.29.24301911v1.5","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-021-05950-x"},{"key":"2024020110451112000_2024.01.29.24301911v1.6","doi-asserted-by":"publisher","DOI":"10.1038\/S41467-021-23926-Y"},{"key":"2024020110451112000_2024.01.29.24301911v1.7","unstructured":"World Health Organization. A global strategy to eliminate yellow fever epidemics (EYE) 2017\u20132026. Geneva: World Health Organization; 2018. Available: https:\/\/apps.who.int\/iris\/handle\/10665\/272408"},{"key":"2024020110451112000_2024.01.29.24301911v1.8","unstructured":"Eliminate yellow fever epidemics (EYE) strategy 2017-2026. [cited 5 Mar 2023]. Available: https:\/\/www.who.int\/initiatives\/eye-strategy"},{"key":"2024020110451112000_2024.01.29.24301911v1.9","doi-asserted-by":"publisher","DOI":"10.1007\/s10393-017-1304-3"},{"key":"2024020110451112000_2024.01.29.24301911v1.10","doi-asserted-by":"publisher","DOI":"10.1038\/s42003-022-03492-9"},{"key":"2024020110451112000_2024.01.29.24301911v1.11","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PNTD.0008691"},{"key":"2024020110451112000_2024.01.29.24301911v1.12","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pclm.0000023"},{"key":"2024020110451112000_2024.01.29.24301911v1.13","unstructured":"Yellow Fever (YF) vaccination coverage. [cited 28 Sep 2022]. Available: https:\/\/immunizationdata.who.int\/pages\/coverage\/yfv.html?CODE=GHA&YEAR="},{"key":"2024020110451112000_2024.01.29.24301911v1.14","doi-asserted-by":"publisher","DOI":"10.3201\/eid2909.221671"},{"key":"2024020110451112000_2024.01.29.24301911v1.15","unstructured":"World Health Organization. Disease Outbreak News; Yellow Fever - Ghana. 1 Dec 2021 [cited 1 Aug 2023]. Available: https:\/\/www.who.int\/emergencies\/disease-outbreak-news\/item\/yellow-fever---ghana"},{"key":"2024020110451112000_2024.01.29.24301911v1.16","unstructured":"Word Health Organization. Yellow Fever - West and Central Africa. In: Disease Outbreak News [Internet]. 23 Dec 2021 [cited 17 Jan 2024]. Available: https:\/\/www.who.int\/emergencies\/disease-outbreak-news\/item\/yellow-fever---west-and-central-africa"},{"key":"2024020110451112000_2024.01.29.24301911v1.17","unstructured":"WHO report on global surveillance of epidemic-prone infectious diseases. [cited 2 Dec 2023]. Available: https:\/\/www.who.int\/publications-detail-redirect\/WHO-CDS-CSR-ISR-2000.1"},{"key":"2024020110451112000_2024.01.29.24301911v1.18","unstructured":"WHO. Yellow Fever Cases Reported in Ghana, 1950\u20132004. World Health Organization; 2005."},{"key":"2024020110451112000_2024.01.29.24301911v1.19","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10101914"},{"key":"2024020110451112000_2024.01.29.24301911v1.20","doi-asserted-by":"publisher","DOI":"10.6084\/m9.figshare.24747165"},{"key":"2024020110451112000_2024.01.29.24301911v1.21","unstructured":"Scott D. Epidemic Disease in Ghana 1901-1960. London: Oxford Univesity Press; 1965."},{"key":"2024020110451112000_2024.01.29.24301911v1.22","first-page":"285","article-title":"Yellow fever in Africa and South America, 2011-2012 = Fi\u00e8vre jaune en Afrique et en Am\u00e9rique du Sud, 2011-2012","volume":"88","author":"WHO","year":"2013","journal-title":"Weekly Epidemiological Record = Relev\u00e9 \u00e9pid\u00e9miologique hebdomadaire"},{"key":"2024020110451112000_2024.01.29.24301911v1.23","first-page":"577","article-title":"Yellow fever in Ghana, 1977-80","volume":"62","year":"1984","journal-title":"Bulletin of the World Health Organization"},{"key":"2024020110451112000_2024.01.29.24301911v1.24","unstructured":"Risk assessment on yellow fever virus circulation in endemic countries. [cited 7 Nov 2023]. Available: https:\/\/www.who.int\/publications-detail-redirect\/WHO-HSE-PED-CED-2014-2"},{"key":"2024020110451112000_2024.01.29.24301911v1.25","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1005780"},{"key":"2024020110451112000_2024.01.29.24301911v1.26","doi-asserted-by":"publisher","DOI":"10.1016\/j.ecolmodel.2005.03.026"},{"key":"2024020110451112000_2024.01.29.24301911v1.27","doi-asserted-by":"publisher","DOI":"10.1111\/ecog.01509"},{"key":"2024020110451112000_2024.01.29.24301911v1.28","doi-asserted-by":"publisher","DOI":"10.1111\/j.1600-0587.2013.07872.x"},{"key":"2024020110451112000_2024.01.29.24301911v1.29","doi-asserted-by":"publisher","DOI":"10.1002\/joc.1276"},{"key":"2024020110451112000_2024.01.29.24301911v1.30","doi-asserted-by":"publisher","DOI":"10.1016\/j.rse.2009.08.016"},{"key":"2024020110451112000_2024.01.29.24301911v1.31","doi-asserted-by":"publisher","DOI":"10.7927\/H4N014G5"},{"key":"2024020110451112000_2024.01.29.24301911v1.32","doi-asserted-by":"publisher","DOI":"10.7927\/H4F47M65"},{"key":"2024020110451112000_2024.01.29.24301911v1.33","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2699.2006.01594.x"},{"key":"2024020110451112000_2024.01.29.24301911v1.34","first-page":"231","article-title":"A Brief Tutorial on Maxent","volume":"190","year":"2005","journal-title":"AT&T Research"},{"key":"2024020110451112000_2024.01.29.24301911v1.35","doi-asserted-by":"publisher","DOI":"10.1016\/0035-9203(57)90079-2"},{"key":"2024020110451112000_2024.01.29.24301911v1.36","first-page":"99","article-title":"Surveillance of yellow fever in Ghana, 1960 et 1970","volume":"10","year":"1972","journal-title":"ORSTOM Ser Entomol Med Parasitol"},{"key":"2024020110451112000_2024.01.29.24301911v1.37","unstructured":"P.A.K. ADDY KM and VKA . Recent Yellow Fever Epidemics in Ghana (1969-1983). EAST AFRICAN MEDICAL JOURNAL. 1986;63."},{"key":"2024020110451112000_2024.01.29.24301911v1.38","unstructured":"World Health Organization. Weekly Epidemiological Record, 2008, vol. 83, 08 [full issue]. Weekly Epidemiological Record = Relev\u00e9 \u00e9pid\u00e9miologique hebdomadaire. 2008;83: 69\u201376."},{"key":"2024020110451112000_2024.01.29.24301911v1.39","unstructured":"WHO. Yellow fever in Ghana. In: Disease Outbreak News [Internet]. 3 Feb 2012 [cited 3 Dec 2023]. Available: https:\/\/www.who.int\/emergencies\/disease-outbreak-news\/item\/2012_02_03b-en"},{"key":"2024020110451112000_2024.01.29.24301911v1.40","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PGPH.0000733"},{"key":"2024020110451112000_2024.01.29.24301911v1.41","doi-asserted-by":"publisher","DOI":"10.1016\/S2214-109X(18)30024-X"},{"key":"2024020110451112000_2024.01.29.24301911v1.42","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(11)70147-5"},{"key":"2024020110451112000_2024.01.29.24301911v1.43","doi-asserted-by":"publisher","DOI":"10.7554\/ELIFE.64670"}],"container-title":[],"original-title":[],"link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1101\/2024.01.29.24301911","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T19:49:57Z","timestamp":1768506597000},"score":1,"resource":{"primary":{"URL":"http:\/\/medrxiv.org\/lookup\/doi\/10.1101\/2024.01.29.24301911"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1,30]]},"references-count":43,"URL":"https:\/\/doi.org\/10.1101\/2024.01.29.24301911","relation":{"is-preprint-of":[{"id-type":"doi","id":"10.1371\/journal.pgph.0003337","asserted-by":"subject"}],"has-review":[{"id-type":"doi","id":"10.1162\/2e3983f5.d82d0d1b","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.11ed58cd","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.eff1cb2d","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.652a2e00","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.b644f8b5","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.791b521f","asserted-by":"object"},{"id-type":"doi","id":"10.1162\/2e3983f5.28c42577","asserted-by":"object"}]},"subject":[],"published":{"date-parts":[[2024,1,30]]},"subtype":"preprint"}}