{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"bioRxiv"}],"indexed":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T23:13:34Z","timestamp":1768518814261,"version":"3.49.0"},"posted":{"date-parts":[[2024,12,20]]},"group-title":"Microbiology","reference-count":58,"publisher":"openRxiv","license":[{"start":{"date-parts":[[2024,12,20]],"date-time":"2024-12-20T00:00:00Z","timestamp":1734652800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2024,12,20]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                <jats:p>\n                  We describe a new release of the\n                  <jats:italic>Candida albicans<\/jats:italic>\n                  PeptideAtlas proteomics spectral resource (build 2024-03), providing a sequence coverage of 79.5% at the canonical protein level, matched mass spectrometry spectra, and experimental evidence identifying 3382 and 536 phosphorylated serine and threonine sites with false localization rates of 1% and 5.3%, respectively. We provide a tutorial on how to use the PeptideAtlas and associated tools to access this information. The\n                  <jats:italic>C. albicans<\/jats:italic>\n                  PeptideAtlas summary web page provides \"Build overview\", \"PTM coverage\", \"Experiment contribution\", and \"Dataset contribution\" information. The protein and peptide information can also be accessed via the\n                  <jats:italic>Candida<\/jats:italic>\n                  Genome Database via hyperlinks on each protein page. This allows users to peruse identified peptides, protein coverage, post-translational modifications (PTMs), and experiments identifying each protein. Given the value of understanding the PTM landscape in the sequence of each protein, a more detailed explanation of how to interpret and analyse PTM results is provided in the PeptideAtlas of this important pathogen.\n                <\/jats:p>\n                <jats:p>\n                  <jats:italic>Candida albicans<\/jats:italic>\n                  PeptideAtlas web page:\n                  <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/db.systemsbiology.net\/sbeams\/cgi\/PeptideAtlas\/buildDetails?atlas_build_id=578\">https:\/\/db.systemsbiology.net\/sbeams\/cgi\/PeptideAtlas\/buildDetails?atlas_build_id=578<\/jats:ext-link>\n                <\/jats:p>","DOI":"10.1101\/2024.12.20.629377","type":"posted-content","created":{"date-parts":[[2024,12,20]],"date-time":"2024-12-20T15:55:19Z","timestamp":1734710119000},"source":"Crossref","is-referenced-by-count":0,"title":["<i>Candida albicans<\/i>\n                  a comprehensive view of the proteome"],"prefix":"10.64898","author":[{"given":"Leticia","family":"Gomez-Artiguez","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Samuel","family":"de la C\u00e1mara-Fuentes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhi","family":"Sun","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mar\u00eda 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