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However, environmental and chemical stressors in bioreactors often trigger cell death, particularly apoptosis, posing a significant challenge to recombinant protein manufacturing. Rapid, label-free methods to monitor cell death are essential for ensuring better production quality. Stimulated Raman scattering (SRS) microscopy offers a powerful, label-free approach to measure lipid and protein compositions in live cells. We demonstrate that SRS microscopy enables rapid and reagent-free analysis of apoptotic and necrotic transitions. Our results show that apoptotic cells exhibit higher protein concentrations, while necrotic cells show an opposite trend. To enhance analysis, we developed a quantitative single-cell analysis pipeline that extracts chemotypic and phenotypic signatures of apoptosis and necrosis, enabling the identification of subpopulations with varied responses to stressors or treatments. Furthermore, the cell death analysis was successfully generalized to other stressors and cell types. This study highlights SRS microscopy as a robust and non-invasive tool for rapid monitoring of live cell apoptotic and necrotic transitions. Our method and findings hold potential for improving quality control in CHO cell-based biopharmaceutical production and for evaluating cell death in diverse biological contexts.<\/jats:p>","DOI":"10.1101\/2025.03.01.641010","type":"posted-content","created":{"date-parts":[[2025,3,7]],"date-time":"2025-03-07T07:11:21Z","timestamp":1741331481000},"source":"Crossref","is-referenced-by-count":1,"title":["Label-Free Quantification of Apoptosis and Necrosis Using Stimulated Raman Scattering Microscopy"],"prefix":"10.64898","author":[{"given":"Shivam","family":"Mahapatra","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shreya B.","family":"Shivpuje","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Helen C.","family":"Campbell","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Boyong","family":"Wan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Justin","family":"Lomont","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"B.","family":"Dong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Seohee","family":"Ma","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karsten J.","family":"Mohn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chi","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"54368","reference":[{"key":"2025030704215390000_2025.03.01.641010v1.1","doi-asserted-by":"publisher","DOI":"10.2174\/138920110791111960"},{"key":"2025030704215390000_2025.03.01.641010v1.2","doi-asserted-by":"publisher","DOI":"10.1016\/j.coche.2013.08.002"},{"key":"2025030704215390000_2025.03.01.641010v1.3","doi-asserted-by":"publisher","DOI":"10.1002\/bit.27269"},{"key":"2025030704215390000_2025.03.01.641010v1.4","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0290(19990320)62:6<632::AID-BIT2>3.0.CO;2-I"},{"key":"2025030704215390000_2025.03.01.641010v1.5","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4020-6554-5_1"},{"key":"2025030704215390000_2025.03.01.641010v1.6","doi-asserted-by":"publisher","DOI":"10.1080\/01926230701320337"},{"key":"2025030704215390000_2025.03.01.641010v1.7","doi-asserted-by":"publisher","DOI":"10.1080\/10408440008951122"},{"key":"2025030704215390000_2025.03.01.641010v1.8","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2184.1991.tb01150.x"},{"key":"2025030704215390000_2025.03.01.641010v1.9","doi-asserted-by":"publisher","DOI":"10.1002\/bit.10250"},{"key":"2025030704215390000_2025.03.01.641010v1.10","doi-asserted-by":"publisher","DOI":"10.1016\/j.febslet.2010.10.046"},{"issue":"1","key":"2025030704215390000_2025.03.01.641010v1.11","first-page":"3","article-title":"Apoptosis, oncosis, and necrosis. 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