{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"bioRxiv"}],"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T09:43:47Z","timestamp":1775987027964,"version":"3.50.1"},"posted":{"date-parts":[[2025,4,2]]},"group-title":"Genomics","reference-count":85,"publisher":"openRxiv","license":[{"start":{"date-parts":[[2025,4,2]],"date-time":"2025-04-02T00:00:00Z","timestamp":1743552000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2025,4,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                <jats:p>\n                  Atherosclerosis, a chronic inflammatory condition driving coronary artery disease (CAD), manifests in two primary plaque types: unstable atheromatous plaques and stable fibrous plaques. While significant research has focused on atheromatous plaques, recent studies emphasize the growing importance of fibrous plaques, particularly in females under 50 years of age, where erosion on fibrous plaques significantly contributes to coronary thrombosis. The molecular mechanisms underlying sex differences in atherosclerotic plaque characteristics, including vascular smooth muscle cell (VSMC) contributions, remain understudied. Therefore, we utilized sex-specific gene regulatory networks (GRNs) derived from VSMC gene expression data from 119 male and 32 female heart transplant donors to identify molecular drivers of fibrous plaques. GRN analysis revealed two female-biased networks in VSMC, GRN\n                  <jats:sub>floralwhite<\/jats:sub>\n                  and GRN\n                  <jats:sub>yellowgreen<\/jats:sub>\n                  , enriched for inflammatory signaling and actin remodeling pathways, respectively. Single-cell RNA sequencing of carotid plaques from female and male patients confirmed the sex specificity of these networks in VSMCs. Further sub cellular phenotyping of the single-cell RNA sequencing revealed a sex-specific gene expression signature within GRN\n                  <jats:sub>yellowgreen<\/jats:sub>\n                  for VSMCs enriched for contractile and vasculature development pathways. Bayesian network modeling of the GRN\n                  <jats:sub>yellowgreen<\/jats:sub>\n                  identified\n                  <jats:italic>MYH9<\/jats:italic>\n                  as a key driver gene. Indeed, elevated MYH9 protein expression in atherosclerotic plaques was associated with higher smooth muscle cell content and lower lipid content in female plaques, suggesting its involvement in fibrous plaque formation. Further proteomic analysis confirmed MYH9\u2019s upregulation in female fibrous plaques only and its correlation with stable plaque features. These findings provide novel insights into sex-specific molecular mechanisms regulating fibrous plaque formation.\n                <\/jats:p>","DOI":"10.1101\/2025.03.28.645955","type":"posted-content","created":{"date-parts":[[2025,4,2]],"date-time":"2025-04-02T11:40:27Z","timestamp":1743594027000},"source":"Crossref","is-referenced-by-count":0,"title":["Female-biased vascular smooth muscle cell gene regulatory networks predict MYH9 as a key regulator of fibrous plaque phenotype"],"prefix":"10.64898","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3555-0964","authenticated-orcid":false,"given":"R Noah","family":"Perry","sequence":"first","affiliation":[{"name":"Department of Biomedical Engineering, University of Virginia, Charlottesville, VA"},{"name":"Department of Genome Sciences, University of Virginia, Charlottesville, VA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Graham","family":"Lenert","sequence":"additional","affiliation":[{"name":"Department of 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