{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,7]],"date-time":"2026-08-07T14:33:37Z","timestamp":1786113217739,"version":"build-2736575974"},"reference-count":74,"publisher":"Cold Spring Harbor Laboratory","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Cold Spring Harb Perspect Med"],"published-print":{"date-parts":[[2026,8]]},"DOI":"10.1101\/cshperspect.a041861","type":"journal-article","created":{"date-parts":[[2026,5,26]],"date-time":"2026-05-26T15:50:13Z","timestamp":1779810613000},"page":"a041861","source":"Crossref","is-referenced-by-count":0,"title":["Malaria Parasite Genomics: Decentralization, Diversification, and Development Goals"],"prefix":"10.1101","volume":"16","author":[{"given":"Alfred","family":"Amambua-Ngwa","sequence":"first","affiliation":[{"name":"Medical Research Council Unit, The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia (West Africa)"},{"name":"Pathogens Genomic Diversity Network Africa (PDNA), Sotuba, Bamako, Mali (West Africa)"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel E.","family":"Neafsey","sequence":"additional","affiliation":[{"name":"Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, Massachusetts 02115, USA"},{"name":"Infectious Disease and Microbiome Program, Broad Institute, Cambridge, Massachusetts 02460, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah K.","family":"Volkman","sequence":"additional","affiliation":[{"name":"Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, Massachusetts 02115, USA"},{"name":"Infectious Disease and Microbiome Program, Broad Institute, Cambridge, Massachusetts 02460, USA"},{"name":"Department of Nursing, Simmons University, Boston, Massachusetts 02115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mamadou Alpha","family":"Diallo","sequence":"additional","affiliation":[{"name":"International Research and Training Center in Applied Genomic and Health Surveillance (CIGASS), Cheikh Anta Diop University, Dakar 16477, Senegal (West Africa)"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"246","published-online":{"date-parts":[[2026,5,26]]},"reference":[{"key":"2026080511152317000_16.8.a041861.1","unstructured":"Africa CDC. 2023. Africa pathogen genomics initiative | Africa PGI 2.0. Africa Centers for Disease Control and Prevention, Addis Ababa, Ethiopia. https:\/\/africacdc.org\/africa-pathogen-genomics-initiative-africa-pgi"},{"key":"2026080511152317000_16.8.a041861.2","unstructured":"Africa CDC. 2025. Roadmap for the implementation of malaria genomic surveillance in Africa. Africa Centers for Disease Control and Prevention, Addis Ababa, Ethiopia. https:\/\/africacdc.org\/download\/roadmap-for-the-implementation-of-malaria-genomic-surveillance-in-africa"},{"key":"2026080511152317000_16.8.a041861.3","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.4606"},{"key":"2026080511152317000_16.8.a041861.4","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mss151"},{"key":"2026080511152317000_16.8.a041861.5","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(18)30068-9"},{"key":"2026080511152317000_16.8.a041861.6","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-94716-5"},{"key":"2026080511152317000_16.8.a041861.7","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0319460"},{"key":"2026080511152317000_16.8.a041861.8","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiy223"},{"key":"2026080511152317000_16.8.a041861.9","doi-asserted-by":"publisher","DOI":"10.1101\/2025.11.05.686777"},{"key":"2026080511152317000_16.8.a041861.10","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-6442-0_6"},{"key":"2026080511152317000_16.8.a041861.11","doi-asserted-by":"publisher","DOI":"10.1038\/nature07327"},{"key":"2026080511152317000_16.8.a041861.12","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2008.09.003"},{"key":"2026080511152317000_16.8.a041861.13","doi-asserted-by":"publisher","DOI":"10.1126\/science.1215966"},{"key":"2026080511152317000_16.8.a041861.14","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02257-16"},{"key":"2026080511152317000_16.8.a041861.15","doi-asserted-by":"publisher","DOI":"10.1186\/s12936-019-2784-0"},{"key":"2026080511152317000_16.8.a041861.16","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-45688-z"},{"key":"2026080511152317000_16.8.a041861.17","doi-asserted-by":"publisher","DOI":"10.1128\/mbio.01967-23"},{"key":"2026080511152317000_16.8.a041861.18","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(20)30967-3"},{"key":"2026080511152317000_16.8.a041861.19","doi-asserted-by":"publisher","DOI":"10.1093\/hmg\/ddad026"},{"key":"2026080511152317000_16.8.a041861.20","doi-asserted-by":"publisher","DOI":"10.1038\/nature01097"},{"key":"2026080511152317000_16.8.a041861.21","doi-asserted-by":"publisher","DOI":"10.37191\/Mapsci-JIDM-1(2)-006"},{"key":"2026080511152317000_16.8.a041861.22","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-023-01516-6"},{"key":"2026080511152317000_16.8.a041861.23","doi-asserted-by":"publisher","DOI":"10.4269\/ajtmh.22-0749"},{"key":"2026080511152317000_16.8.a041861.24","doi-asserted-by":"publisher","DOI":"10.1126\/science.1076181"},{"key":"2026080511152317000_16.8.a041861.25","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-20925-7"},{"key":"2026080511152317000_16.8.a041861.26","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(20)30939-7"},{"key":"2026080511152317000_16.8.a041861.27","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-33804-w"},{"key":"2026080511152317000_16.8.a041861.28","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.62997"},{"key":"2026080511152317000_16.8.a041861.29","doi-asserted-by":"publisher","DOI":"10.1101\/2024.09.27.615529"},{"key":"2026080511152317000_16.8.a041861.30","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2022.953187"},{"key":"2026080511152317000_16.8.a041861.31","doi-asserted-by":"publisher","DOI":"10.21769\/BioProtoc.4621"},{"key":"2026080511152317000_16.8.a041861.32","doi-asserted-by":"publisher","DOI":"10.1111\/1755-0998.13622"},{"key":"2026080511152317000_16.8.a041861.33","doi-asserted-by":"publisher","DOI":"10.1186\/s13071-025-07058-6"},{"key":"2026080511152317000_16.8.a041861.34","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(20)30206-8p"},{"key":"2026080511152317000_16.8.a041861.35","doi-asserted-by":"publisher","DOI":"10.12688\/wellcomeopenres.17795.1"},{"key":"2026080511152317000_16.8.a041861.36","doi-asserted-by":"publisher","DOI":"10.12688\/wellcomeopenres.24031.1"},{"key":"2026080511152317000_16.8.a041861.37","doi-asserted-by":"publisher","DOI":"10.1038\/nature11174"},{"key":"2026080511152317000_16.8.a041861.38","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2023.08.007"},{"key":"2026080511152317000_16.8.a041861.39","doi-asserted-by":"publisher","DOI":"10.1101\/cshperspect.a041856"},{"key":"2026080511152317000_16.8.a041861.40","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2624"},{"key":"2026080511152317000_16.8.a041861.41","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3189"},{"key":"2026080511152317000_16.8.a041861.42","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.adi2364"},{"key":"2026080511152317000_16.8.a041861.43","doi-asserted-by":"publisher","DOI":"10.1038\/ng1924"},{"key":"2026080511152317000_16.8.a041861.44","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msg162"},{"key":"2026080511152317000_16.8.a041861.45","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijpddr.2021.07.004"},{"key":"2026080511152317000_16.8.a041861.46","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2025.1526049"},{"key":"2026080511152317000_16.8.a041861.47","doi-asserted-by":"publisher","DOI":"10.1111\/mec.12099"},{"key":"2026080511152317000_16.8.a041861.48","doi-asserted-by":"publisher","DOI":"10.1101\/cshperspect.a041875"},{"key":"2026080511152317000_16.8.a041861.49","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijpddr.2021.05.006"},{"key":"2026080511152317000_16.8.a041861.50","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2021.02.007"},{"key":"2026080511152317000_16.8.a041861.51","doi-asserted-by":"publisher","DOI":"10.1186\/s12936-016-1641-7"},{"key":"2026080511152317000_16.8.a041861.52","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1210585109"},{"key":"2026080511152317000_16.8.a041861.53","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-54731-y"},{"key":"2026080511152317000_16.8.a041861.54","doi-asserted-by":"publisher","DOI":"10.1101\/2025.04.01.25325032"},{"key":"2026080511152317000_16.8.a041861.55","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-43087-4"},{"key":"2026080511152317000_16.8.a041861.56","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-51015-3"},{"key":"2026080511152317000_16.8.a041861.57","doi-asserted-by":"publisher","DOI":"10.1186\/1475-2875-8-115"},{"key":"2026080511152317000_16.8.a041861.58","doi-asserted-by":"publisher","DOI":"10.1534\/genetics.119.302120"},{"key":"2026080511152317000_16.8.a041861.59","unstructured":"UN Environmental Programme. 2011. The Nagoya protocol on access to genetic resources and the fair and equitable sharing of benefits arising from their utilization. Secretariat of the Convention on Biological Diversity, Montreal. https:\/\/www.cbd.int\/abs\/doc\/protocol\/nagoya-protocol-en.pdf"},{"key":"2026080511152317000_16.8.a041861.60","unstructured":"Verity B , Ruybal S . 2024. DRpower: study design and analysis for pfhrp2\/3 deletion prevalence studies (R package version 1.0.3). https:\/\/mrc-ide.github.io\/DRpower"},{"key":"2026080511152317000_16.8.a041861.61","doi-asserted-by":"publisher","DOI":"10.1038\/ng1930"},{"key":"2026080511152317000_16.8.a041861.62","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2016.10.001"},{"key":"2026080511152317000_16.8.a041861.63","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa225"},{"key":"2026080511152317000_16.8.a041861.64","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.88.8.3382"},{"key":"2026080511152317000_16.8.a041861.65","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0096486"},{"key":"2026080511152317000_16.8.a041861.66","unstructured":"WHO. 2019. Technical consultation on the role of parasite and anopheline genetics in malaria surveillance. In Malaria Policy Advisory Committee Meeting, Session 7, WHO\/CDS\/GMP\/MPAC\/2019.17. World Health Organization, Geneva."},{"key":"2026080511152317000_16.8.a041861.67","unstructured":"WHO. 2022a. Global genomic surveillance strategy for pathogens with pandemic and epidemic potential 2022\u20132032. World Health Organization, Geneva. https:\/\/www.who.int\/initiatives\/genomic-surveillance-strategy"},{"key":"2026080511152317000_16.8.a041861.68","unstructured":"WHO. 2022b. Strategy to respond to antimalarial drug resistance in Africa. World Health Organization, Geneva. https:\/\/www.who.int\/publications\/i\/item\/9789240060265"},{"key":"2026080511152317000_16.8.a041861.69","unstructured":"WHO. 2025a. International pathogen surveillance network (IPSN). World Health Organization, Geneva. https:\/\/www.who.int\/initiatives\/international-pathogen-surveillance-network"},{"key":"2026080511152317000_16.8.a041861.70","unstructured":"WHO. 2025b. Subnational tailoring of malaria strategies and interventions. World Health Organization, Geneva. https:\/\/www.who.int\/publications\/i\/item\/9789240115712"},{"key":"2026080511152317000_16.8.a041861.71","doi-asserted-by":"publisher","DOI":"10.1186\/s12936-024-04897-z"},{"key":"2026080511152317000_16.8.a041861.72","doi-asserted-by":"publisher","DOI":"10.1101\/cshperspect.a041858"},{"key":"2026080511152317000_16.8.a041861.73","doi-asserted-by":"publisher","DOI":"10.1038\/nature00813"},{"key":"2026080511152317000_16.8.a041861.74","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2021.01.009"}],"container-title":["Cold Spring Harbor Perspectives in Medicine"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1101\/cshperspect.a041861","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,5]],"date-time":"2026-08-05T18:15:46Z","timestamp":1785953746000},"score":1,"resource":{"primary":{"URL":"http:\/\/perspectivesinmedicine.cshlp.org\/lookup\/doi\/10.1101\/cshperspect.a041861"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,5,26]]},"references-count":74,"journal-issue":{"issue":"8","published-online":{"date-parts":[[2026,8,5]]},"published-print":{"date-parts":[[2026,8]]}},"alternative-id":["10.1101\/cshperspect.a041861"],"URL":"https:\/\/doi.org\/10.1101\/cshperspect.a041861","relation":{},"ISSN":["2157-1422"],"issn-type":[{"value":"2157-1422","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,5,26]]}}}