{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,30]],"date-time":"2026-07-30T14:12:32Z","timestamp":1785420752987,"version":"3.56.0"},"reference-count":28,"publisher":"International Union of Crystallography (IUCr)","issue":"1","license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode"}],"funder":[{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["19H00834"],"award-info":[{"award-number":["19H00834"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["20H02028"],"award-info":[{"award-number":["20H02028"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["22H04932,"],"award-info":[{"award-number":["22H04932,"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["22H05109"],"award-info":[{"award-number":["22H05109"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020959","name":"JST-Mirai Program","doi-asserted-by":"publisher","award":["JPMJMI20C2"],"award-info":[{"award-number":["JPMJMI20C2"]}],"id":[{"id":"10.13039\/501100020959","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020959","name":"JST-Mirai Program","doi-asserted-by":"publisher","award":["JPMJMI22C1"],"award-info":[{"award-number":["JPMJMI22C1"]}],"id":[{"id":"10.13039\/501100020959","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002241","name":"Japan Science and Technology Agency","doi-asserted-by":"publisher","award":["Structural Materials for Innovation of SIP Program"],"award-info":[{"award-number":["Structural Materials for Innovation of SIP Program"]}],"id":[{"id":"10.13039\/501100002241","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100019701","name":"Iron and Steel Institute of Japan","doi-asserted-by":"publisher","award":["Research Promotion Grant (33rd, 2024)"],"award-info":[{"award-number":["Research Promotion Grant (33rd, 2024)"]}],"id":[{"id":"10.13039\/100019701","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100015641","name":"Tateisi Science and Technology Foundation","doi-asserted-by":"publisher","award":["2237001"],"award-info":[{"award-number":["2237001"]}],"id":[{"id":"10.13039\/100015641","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Mizuho Foundation for the Promotion of Sciences, Japan"}],"content-domain":{"domain":["iucr.org","wiley.com","iucrj.org"],"crossmark-restriction":true},"short-container-title":["J Synchrotron Rad","J Synchrotron Radiat"],"accepted":{"date-parts":[[2024,11,18]]},"published-print":{"date-parts":[[2025,1,1]]},"abstract":"<jats:p>\n                    X-ray spectromicroscopy is extensively utilized for nondestructive mapping of chemical states in materials. However, understanding and analyzing the geometric and topological aspects of such data pose challenges due to their representation in 4D space, encompassing (\n                    <jats:italic>x<\/jats:italic>\n                    ,\n                    <jats:italic>y<\/jats:italic>\n                    ,\n                    <jats:italic>z<\/jats:italic>\n                    ) coordinates along with the energy (\n                    <jats:italic>E<\/jats:italic>\n                    ) axis and often extending to 5D space with the inclusion of time (\n                    <jats:italic>t<\/jats:italic>\n                    ) or reaction degree. In this study, we addressed this challenge by developing a new approach and introducing a device named `\n                    <jats:italic>4D-XASView<\/jats:italic>\n                    ', specifically designed for visualizing X-ray absorption fine structures (XAFS) data in 4D (comprising 3D space and energy), through a multi-projection system, within the virtual reality (VR) environment. As a test case for the new system, X-ray spectromicroscopy measurements were conducted on a specimen prepared from serpentinized harzburgite sourced from the upper mantle section of the Oman ophiolite. Our\n                    <jats:italic>4D-XASView<\/jats:italic>\n                    facilitates the visualization and analysis of the geometric and topological aspects of the data using VR goggles, enabling detailed exploration of microstructures via rotation and zooming functionalities. This capability allows us to extract XAFS spectral data by selecting specific positions and regions, thereby aiding in the identification of `trigger sites' (magnetite in serpentine), which are characteristic locations within materials that substantially influence the macroscopic propagation of reactions. Our methodology establishes a new platform for analyzing 4D or 5D XAFS data that has applicability potential in various other multidimensional datasets, including microstructures coupled with spectroscopy and diffraction data.\n                  <\/jats:p>","DOI":"10.1107\/s1600577524011226","type":"journal-article","created":{"date-parts":[[2024,12,12]],"date-time":"2024-12-12T06:39:12Z","timestamp":1733985552000},"page":"162-170","update-policy":"https:\/\/doi.org\/10.1107\/cm_01","source":"Crossref","is-referenced-by-count":3,"title":["Visualization of four-dimensional X-ray absorption fine structure data using a virtual reality system"],"prefix":"10.1107","volume":"32","author":[{"given":"Haruo","family":"Igarashi","sequence":"first","affiliation":[{"id":[{"id":"https:\/\/ror.org\/00ntfnx83","id-type":"ROR","asserted-by":"publisher"}],"department":["School of Advanced Science and Engineering"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daiki","family":"Kido","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/01g5y5k24","id-type":"ROR","asserted-by":"publisher"}],"department":["Institute of Materials Structure Science"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yutaka","family":"Ishii","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/00p4k0j84","id-type":"ROR","asserted-by":"publisher"}],"department":["Department of Mathematics"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5808-5594","authenticated-orcid":true,"given":"Yasuhiro","family":"Niwa","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/01g5y5k24","id-type":"ROR","asserted-by":"publisher"}],"department":["Institute of Materials Structure Science"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Atsushi","family":"Okamoto","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/01dq60k83","id-type":"ROR","asserted-by":"publisher"}],"department":["Graduate School of Environmental Studies"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8645-2224","authenticated-orcid":true,"given":"Masao","family":"Kimura","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/01g5y5k24","id-type":"ROR","asserted-by":"publisher"}],"department":["Institute of Materials Structure Science"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"329","published-online":{"date-parts":[[2025,1,1]]},"reference":[{"key":"vy5033_bb1","doi-asserted-by":"crossref","first-page":"60551V","DOI":"10.1117\/12.643651","volume":"6055","author":"Aguilera","year":"2006","journal-title":"Proc. SPIE"},{"key":"vy5033_bb2","doi-asserted-by":"crossref","first-page":"818","DOI":"10.3758\/PBR.16.5.818","volume":"16","author":"Ambinder","year":"2009","journal-title":"Psychon.c Bull. Rev."},{"key":"vy5033_bb3","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1111\/cgf.12280","volume":"33","author":"Balsa Rodr\u00edguez","year":"2014","journal-title":"Comput. Graph. Forum"},{"key":"vy5033_bb4","unstructured":"Bishop, C. M. (2006). Pattern Recognition and Machine Learning. Springer."},{"key":"vy5033_bb5","doi-asserted-by":"crossref","unstructured":"Bunker, G. (2010). Introduction to XAFS: a Practical Guide to X-ray Absorption Fine Structure Spectroscopy. Cambridge University Press.","DOI":"10.1017\/CBO9780511809194"},{"key":"vy5033_bb6","unstructured":"Igarashi, H. & Sawada, H. (2023). Proceedings of the International Conference on Artificial Reality and Telexistence Eurographics Symposium on Virtual Environments, edited by J.-M. Normand, M. Sugimoto & V. Sundstedt, p. 3038682187."},{"key":"vy5033_bb7","doi-asserted-by":"crossref","unstructured":"Jacobsen, C. (2020). X-ray Microscopy. Cambridge University Press.","DOI":"10.1017\/9781139924542"},{"key":"vy5033_bb8","doi-asserted-by":"crossref","first-page":"994","DOI":"10.1016\/j.jpowsour.2014.03.066","volume":"269","author":"Katayama","year":"2014","journal-title":"J. Power Sources"},{"key":"vy5033_bb9","doi-asserted-by":"crossref","first-page":"3553","DOI":"10.1038\/s41598-018-21867-z","volume":"8","author":"Kimura","year":"2018","journal-title":"Sci. Rep."},{"key":"vy5033_bb10","doi-asserted-by":"crossref","first-page":"012015","DOI":"10.1088\/1742-6596\/849\/1\/012015","volume":"849","author":"Kimura","year":"2017","journal-title":"J. Phys. Conf. Ser."},{"key":"vy5033_bb11","doi-asserted-by":"crossref","first-page":"109332","DOI":"10.1016\/j.compscitech.2022.109332","volume":"230","author":"Kimura","year":"2022","journal-title":"Compos. Sci. Technol."},{"key":"vy5033_bb12","doi-asserted-by":"crossref","first-page":"19300","DOI":"10.1038\/s41598-019-55904-2","volume":"9","author":"Kimura","year":"2019","journal-title":"Sci. Rep."},{"key":"vy5033_bb13","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/j.lithos.2013.03.008","volume":"178","author":"Klein","year":"2013","journal-title":"Lithos"},{"key":"vy5033_bb14","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1107\/S0909049511049144","volume":"19","author":"Liu","year":"2012","journal-title":"J. Synchrotron Rad."},{"key":"vy5033_bb15","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1145\/3355049.3360518","author":"Matsumoto","year":"2019","journal-title":"Proc. Int. Conf. SIGGRAPH Asia. 2019: Emerg. Technol."},{"key":"vy5033_bb16","doi-asserted-by":"crossref","first-page":"773","DOI":"10.1107\/S0909049511019364","volume":"18","author":"Meirer","year":"2011","journal-title":"J. Synchrotron Rad."},{"key":"vy5033_bb17","doi-asserted-by":"crossref","first-page":"250","DOI":"10.1109\/TCDS.2017.2710420","volume":"10","author":"Miwa","year":"2018","journal-title":"IEEE Trans. Cogn. Dev. Syst."},{"key":"vy5033_bb18","doi-asserted-by":"crossref","unstructured":"Niwa, Y., Takeichi, Y., Watanabe, T. & Kimura, M. (2019). AIP Conf. Proc. 2054, 050003.","DOI":"10.1063\/1.5084621"},{"key":"vy5033_bb19","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1007\/s41468-018-0013-5","volume":"1","author":"Obayashi","year":"2018","journal-title":"J. Appl. Comput. Topology"},{"key":"vy5033_bb20","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1038\/nmeth.2089","volume":"9","author":"Schneider","year":"2012","journal-title":"Nat. Methods"},{"key":"vy5033_bb21","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1007\/s00410-016-1288-y","volume":"171","author":"Shimizu","year":"2016","journal-title":"Contrib. Mineral. Petrol."},{"key":"vy5033_bb22","doi-asserted-by":"crossref","first-page":"484","DOI":"10.1017\/S1431927618014654","volume":"24","author":"Takeichi","year":"2018","journal-title":"Microsc. Microanal."},{"key":"vy5033_bb23","doi-asserted-by":"crossref","unstructured":"Van Bokhoven, J. A. & Lamberti, C. (2016). X-ray Absorption and X-ray Emission Spectroscopy: Theory and Applications. Chichester: John Wiley & Sons.","DOI":"10.1002\/9781118844243"},{"key":"vy5033_bb24","doi-asserted-by":"crossref","unstructured":"Wachs, I. E. & Ba\u00f1ares, M. A. (2023). Springer Handbook of Advanced Catalyst Characterization. Springer Nature.","DOI":"10.1007\/978-3-031-07125-6"},{"key":"vy5033_bb25","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1080\/13875868.2013.870569","volume":"14","author":"Wang","year":"2014","journal-title":"Spat. Cogn. Comput."},{"key":"vy5033_bb26","doi-asserted-by":"crossref","first-page":"1240","DOI":"10.1021\/acsenergylett.7b00263","volume":"2","author":"Xu","year":"2017","journal-title":"ACS Energy Lett."},{"key":"vy5033_bb277","doi-asserted-by":"crossref","first-page":"e2020JB020268","DOI":"10.1029\/2020JB020268","volume":"125","author":"Yoshida","year":"2020","journal-title":"J. Geophys. Res. Solid Earth"},{"key":"vy5033_bb27","doi-asserted-by":"crossref","first-page":"eade6674","DOI":"10.1126\/sciadv.ade6674","volume":"9","author":"Yoshida","year":"2023","journal-title":"Sci. Adv."}],"container-title":["Journal of Synchrotron Radiation"],"original-title":[],"link":[{"URL":"https:\/\/journals.iucr.org\/s\/issues\/2025\/01\/00\/vy5033\/vy5033.pdf","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.iucr.org\/s\/issues\/2025\/01\/00\/vy5033\/vy5033.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,8]],"date-time":"2025-01-08T06:33:51Z","timestamp":1736318031000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.iucr.org\/paper?S1600577524011226"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1,1]]},"references-count":28,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2025,1]]}},"alternative-id":["S1600577524011226"],"URL":"https:\/\/doi.org\/10.1107\/s1600577524011226","relation":{"is-supplemented-by":[{"id-type":"doi","id":"10.1107\/S1600577524011226\/vy5033sup1.mp4","asserted-by":"subject"},{"id-type":"doi","id":"10.1107\/S1600577524011226\/vy5033sup2.mp4","asserted-by":"subject"}]},"ISSN":["1600-5775"],"issn-type":[{"value":"1600-5775","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,1,1]]},"assertion":[{"value":"Journal of Synchrotron Radiation","order":0,"name":"journal","label":"Publication","explanation":{"URL":"https:\/\/journals.iucr.org\/s"},"group":{"name":"general","label":"General"}},{"value":"research papers","order":1,"name":"content_type","label":"Content type","explanation":{"URL":"https:\/\/journals.iucr.org\/s\/services\/notesforauthors.html"},"group":{"name":"general","label":"General"}},{"value":"Available","URL":"https:\/\/scripts.iucr.org\/cgi-bin\/citedin?vy5033","order":2,"name":"article_metrics","label":"Article metrics","group":{"name":"general","label":"General"}},{"value":"Yes","order":0,"name":"peer_reviewed","label":"Peer reviewed","group":{"name":"peer_review","label":"Peer review"}},{"value":"Single blind","order":1,"name":"review_process","label":"Review process","group":{"name":"peer_review","label":"Peer review"}},{"value":"29 July 2024","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication history"}},{"value":"18 November 2024","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication history"}},{"value":"1 January 2025","order":2,"name":"published_online","label":"Published online","group":{"name":"publication_history","label":"Publication history"}},{"value":"This article has supporting information","name":"supplementary_materials","label":"Supplementary materials","explanation":{"URL":"https:\/\/scripts.iucr.org\/cgi-bin\/sendsup?vy5033"}},{"value":"\u00a9 2025 Haruo Igarashi\n                      et al.","order":0,"name":"copyright","label":"Copyright","explanation":{"URL":"https:\/\/journals.iucr.org\/services\/copyrightpolicy.html"},"group":{"name":"copyright_and_licencing","label":"Copyright and licencing"}},{"value":"Creative Commons Attribution (CC-BY)","order":1,"name":"license","label":"Licence","explanation":{"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode"},"group":{"name":"copyright_and_licencing","label":"Copyright and licencing"}}]}}