{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T15:44:49Z","timestamp":1773330289483,"version":"3.50.1"},"reference-count":72,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","license":[{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"name":"2023 Research, Community Service and Innovation Program, School of Electrical and Information Engineering, Bandung Institute of Technology"},{"DOI":"10.13039\/501100014538","name":"Lembaga Pengelola Dana Pendidikan (LPDP) Republik Indonesia","doi-asserted-by":"publisher","award":["FR742022288602"],"award-info":[{"award-number":["FR742022288602"]}],"id":[{"id":"10.13039\/501100014538","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Access"],"published-print":{"date-parts":[[2023]]},"DOI":"10.1109\/access.2023.3328960","type":"journal-article","created":{"date-parts":[[2023,10,31]],"date-time":"2023-10-31T18:16:45Z","timestamp":1698776205000},"page":"121256-121268","source":"Crossref","is-referenced-by-count":9,"title":["EmbedCaps-DBP: Predicting DNA-Binding Proteins Using Protein Sequence Embedding and Capsule Network"],"prefix":"10.1109","volume":"11","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9330-5863","authenticated-orcid":false,"given":"Muhammad Khaerul","family":"Naim","sequence":"first","affiliation":[{"name":"School of Electrical Engineering and Informatics, Bandung Institute of Technology, Bandung, Indonesia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4698-3017","authenticated-orcid":false,"given":"Tati Rajab","family":"Mengko","sequence":"additional","affiliation":[{"name":"School of Electrical Engineering and Informatics, Bandung Institute of Technology, Bandung, Indonesia"}]},{"given":"Rukman","family":"Hertadi","sequence":"additional","affiliation":[{"name":"Faculty of Mathematics and Natural Sciences, Bandung Institute of Technology, Bandung, Indonesia"}]},{"given":"Ayu","family":"Purwarianti","sequence":"additional","affiliation":[{"name":"School of Electrical Engineering and Informatics, Bandung Institute of Technology, Bandung, Indonesia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7948-6693","authenticated-orcid":false,"given":"Meredita","family":"Susanty","sequence":"additional","affiliation":[{"name":"School of Electrical Engineering and Informatics, Bandung Institute of Technology, Bandung, Indonesia"}]}],"member":"263","reference":[{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-463"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2021.11.1942"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-1037-6"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/1752-0509-9-S1-S10"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1126\/science.abd7331"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.biosystems.2006.08.007"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-022-01432-w"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0167345"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-90"},{"key":"ref11","first-page":"506d","article-title":"UniProt: A worldwide hub of protein knowledge","volume":"47","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1107\/97809553602060000722"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2022.105533"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1155\/2017\/4590609"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks481"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq396"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1038\/srep15479"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-298"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1016\/j.eswa.2022.116729"},{"key":"ref50","article-title":"Language models of protein sequences at the scale of evolution enable accurate structure prediction","author":"lin","year":"2022","journal-title":"BioRxiv"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa750"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab578"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-3220-8"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2016239118"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx823"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-2892-4"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac053"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab371"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0141287"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2009.02.023"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1107\/S2053230X15004112"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/genetics\/141.4.1253"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/nrd1551"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/nrd2199"},{"key":"ref6","first-page":"1","article-title":"Variation in form and function","author":"hoskisson","year":"2009","journal-title":"Advances in Applied Microbiology"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-03780-1"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-020-03631-1"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab502"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-021-01146-5"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-80786-0"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa701"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jproteome.9b00226"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2021.3095381"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1007\/s11431-020-1647-3"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/TNNLS.2020.2979670"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.carres.2019.107857"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.eswa.2022.116729"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab422"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz330"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.1109\/BEC56180.2022.9935600"},{"key":"ref70","first-page":"1295","article-title":"Capsule networks—A survey","volume":"34","author":"patrick","year":"2022","journal-title":"J King Saud Univ -Comput Inf Sci"},{"key":"ref72","doi-asserted-by":"publisher","DOI":"10.1021\/acsomega.1c03842"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2018.05.006"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2022.105395"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1002\/minf.201400025"},{"key":"ref67","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0106691"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2019.2893634"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemolab.2018.08.013"},{"key":"ref69","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20174175"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/j.ins.2016.06.026"},{"key":"ref64","article-title":"Matrix capsules with EM routing","volume":"115","author":"hinton","year":"2018","journal-title":"Proc 6th Int Conf Learn Represent (ICLR)"},{"key":"ref63","article-title":"Dynamic routing between capsules","author":"sabour","year":"2017","journal-title":"Advances in neural information processing systems"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-14945-1"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2009.10507281"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0024756"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-26763-6_14"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1508380112"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab354"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1110\/ps.03128904"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac020"},{"key":"ref62","first-page":"29287","article-title":"Language models enable zero-shot prediction of the effects of mutations on protein function","author":"meier","year":"2021","journal-title":"Advances in neural information processing systems"},{"key":"ref61","article-title":"BERT: Pre-training of deep bidirectional transformers for language understanding","author":"devlin","year":"2018","journal-title":"arXiv 1810 04805"}],"container-title":["IEEE Access"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/6287639\/10005208\/10302268.pdf?arnumber=10302268","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,12,11]],"date-time":"2023-12-11T20:41:11Z","timestamp":1702327271000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10302268\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023]]},"references-count":72,"URL":"https:\/\/doi.org\/10.1109\/access.2023.3328960","relation":{},"ISSN":["2169-3536"],"issn-type":[{"value":"2169-3536","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023]]}}}