{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,30]],"date-time":"2026-03-30T18:14:21Z","timestamp":1774894461386,"version":"3.50.1"},"reference-count":115,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","license":[{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode"}],"funder":[{"DOI":"10.13039\/100010269","name":"Wellcome Trust","doi-asserted-by":"publisher","award":["226691\/Z\/22\/Z"],"award-info":[{"award-number":["226691\/Z\/22\/Z"]}],"id":[{"id":"10.13039\/100010269","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Wellcome CAMO-Net U.K.","award":["226691\/Z\/22\/Z"],"award-info":[{"award-number":["226691\/Z\/22\/Z"]}]},{"name":"EPSRC through the Big Hypotheses","award":["EP\/R018537\/1"],"award-info":[{"award-number":["EP\/R018537\/1"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Access"],"published-print":{"date-parts":[[2024]]},"DOI":"10.1109\/access.2024.3427410","type":"journal-article","created":{"date-parts":[[2024,7,12]],"date-time":"2024-07-12T17:41:22Z","timestamp":1720806082000},"page":"100772-100791","source":"Crossref","is-referenced-by-count":1,"title":["Bayesian Calibration to Address the Challenge of Antimicrobial Resistance: A Review"],"prefix":"10.1109","volume":"12","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8394-7344","authenticated-orcid":false,"given":"Conor","family":"Rosato","sequence":"first","affiliation":[{"name":"Department of Pharmacology and Therapeutics, University of Liverpool, Liverpool, U.K."}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6279-3769","authenticated-orcid":false,"given":"Peter L.","family":"Green","sequence":"additional","affiliation":[{"name":"Department of Mechanical Engineering, University of Liverpool, Liverpool, U.K."}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9606-9480","authenticated-orcid":false,"given":"John","family":"Harris","sequence":"additional","affiliation":[{"name":"United Kingdom Health Security Agency (UKHSA), London, U.K."}]},{"given":"Simon","family":"Maskell","sequence":"additional","affiliation":[{"name":"Department of Electrical Engineering and Electronics, University of Liverpool, Liverpool, U.K."}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6187-878X","authenticated-orcid":false,"given":"William","family":"Hope","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Therapeutics, University of Liverpool, Liverpool, U.K."}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6743-4271","authenticated-orcid":false,"given":"Alessandro","family":"Gerada","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Therapeutics, University of Liverpool, Liverpool, U.K."}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4195-6821","authenticated-orcid":false,"given":"Alex","family":"Howard","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Therapeutics, University of Liverpool, Liverpool, U.K."}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1136\/bmj.319.7208.508"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.bja.2020.04.092"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1177\/096228029600500402"},{"key":"ref4","volume-title":"Antimicrobial Resistance","year":"2023"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(24)00003-X"},{"key":"ref6","volume-title":"Antimicrobial Stewardship","year":"2023"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/s12916-019-1314-9"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/S2589-7500(23)00221-2"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12030452"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1128\/cmr.00179-21"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.01260-20"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.bsheal.2020.08.003"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00498-16"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002973"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1002\/sim.4287"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0248846"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1111\/biom.12198"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1098\/rsif.2016.0745"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-20731-x"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1186\/s12916-021-01932-7"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1098\/rsif.2018.0025"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000450"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkv249"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2006.11.008"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/aje\/kws380"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxv020"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1002\/sim.8510"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-00748-y"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1016\/j.idh.2018.02.005"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.40977"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1010898"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-018-0593-7"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syy007"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks222"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1007\/s11538-012-9731-3"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/jrsssc\/qlad055"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-021-00879-y"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1214\/16-AOAS918"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciz1241"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(21)00744-1"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-023-08200-4"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2334-10-13"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofad165"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1098\/rsif.2023.0074"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.50468"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0132037"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0045758"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.3390\/vaccines9030265"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2017.0679"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1006697"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0261528"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0220427"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1093\/aje\/kwn176"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1177\/0962280215627299"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.4103\/jms.jms_25_17"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1086\/533452"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhin.2023.02.016"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.05777-11"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pmed.1002416"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.1984.4767596"},{"key":"ref61","volume-title":"A Generic Approach to Posterior Integration and Gibbs Sampling","author":"M\u00fcller","year":"1991"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.2307\/3318737"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1007\/s11222-006-9438-0"},{"key":"ref64","doi-asserted-by":"publisher","DOI":"10.1214\/aos\/1176325750"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1016\/0370-2693(87)91197-X"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1201\/b10905-6"},{"key":"ref67","article-title":"A conceptual introduction to Hamiltonian Monte Carlo","author":"Betancourt","year":"2017","journal-title":"arXiv:1701.02434"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.2307\/3318418"},{"key":"ref69","doi-asserted-by":"publisher","DOI":"10.5555\/2627435.2638586"},{"key":"ref70","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v076.i01"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.7717\/peerj-cs.55"},{"issue":"1","key":"ref72","first-page":"973","article-title":"Pyro: Deep universal probabilistic programming","volume":"20","author":"Bingham","year":"2019","journal-title":"J. Mach. Learn. Res."},{"key":"ref73","doi-asserted-by":"publisher","DOI":"10.1098\/rsif.2007.0224"},{"key":"ref74","doi-asserted-by":"publisher","DOI":"10.2307\/2337340"},{"key":"ref75","doi-asserted-by":"publisher","DOI":"10.1098\/rspa.1927.0118"},{"key":"ref76","doi-asserted-by":"publisher","DOI":"10.1109\/78.978374"},{"key":"ref77","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-9868.2009.00736.x"},{"key":"ref78","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-9868.2006.00553.x"},{"key":"ref79","doi-asserted-by":"publisher","DOI":"10.1080\/01621459.2022.2087659"},{"key":"ref80","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymssp.2021.108028"},{"key":"ref81","doi-asserted-by":"publisher","DOI":"10.1109\/TSP.2015.2504342"},{"key":"ref82","doi-asserted-by":"publisher","DOI":"10.1201\/9780429258411"},{"key":"ref83","doi-asserted-by":"publisher","DOI":"10.21236\/ADA459827"},{"key":"ref84","doi-asserted-by":"publisher","DOI":"10.1098\/rsta.2021.0305"},{"key":"ref85","doi-asserted-by":"publisher","DOI":"10.3390\/info14030170"},{"key":"ref86","article-title":"Validating Bayesian inference algorithms with simulation-based calibration","author":"Talts","year":"2018","journal-title":"arXiv:1804.06788"},{"issue":"1","key":"ref87","first-page":"7","article-title":"CODA: Convergence diagnosis and output analysis for MCMC","volume":"6","author":"Plummer","year":"2006","journal-title":"R News"},{"key":"ref88","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v021.i11"},{"key":"ref89","doi-asserted-by":"publisher","DOI":"10.1214\/ss\/1177011136"},{"key":"ref90","doi-asserted-by":"publisher","DOI":"10.1023\/A:1008929526011"},{"key":"ref91","volume-title":"Bayesiantools: General-Purpose Mcmc and Smc Samplers and Tools for Bayesian Statistics","year":"2023"},{"key":"ref92","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2148-7-214"},{"key":"ref93","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v069.i12"},{"key":"ref94","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(21)00031-8"},{"key":"ref95","doi-asserted-by":"publisher","DOI":"10.1111\/2041-210X.12050"},{"key":"ref96","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(21)02724-0"},{"key":"ref97","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S234610"},{"key":"ref98","doi-asserted-by":"publisher","DOI":"10.1002\/bimj.201600253"},{"key":"ref99","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.04209-23"},{"key":"ref100","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syy032"},{"key":"ref101","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00732-19"},{"key":"ref102","doi-asserted-by":"publisher","DOI":"10.2169\/internalmedicine.3477-19"},{"key":"ref103","article-title":"Bayesian inference of reproduction number from epidemiological and genetic data using particle MCMC","author":"Gill","year":"2023","journal-title":"arXiv:2311.09838"},{"key":"ref104","doi-asserted-by":"publisher","DOI":"10.1109\/TSP.2022.3187868"},{"key":"ref105","doi-asserted-by":"publisher","DOI":"10.1007\/s11222-014-9510-0"},{"key":"ref106","doi-asserted-by":"publisher","DOI":"10.1214\/20-BA1222"},{"key":"ref107","doi-asserted-by":"publisher","DOI":"10.1109\/LSP.2024.3386494"},{"key":"ref108","first-page":"3907","article-title":"An adaptive-MCMC scheme for setting trajectory lengths in Hamiltonian Monte Carlo","volume-title":"Proc. Int. Conf. Artif. Intell. Statist.","author":"Hoffman"},{"key":"ref109","doi-asserted-by":"publisher","DOI":"10.1109\/SDF-MFI59545.2023.10361452"},{"key":"ref110","doi-asserted-by":"publisher","DOI":"10.1145\/3565810"},{"key":"ref111","first-page":"18","article-title":"Differentiable agent-based epidemiology","volume-title":"Proc. Int. Conf. Auto. Agents Multiagent Syst.","author":"Chopra"},{"key":"ref112","doi-asserted-by":"publisher","DOI":"10.12688\/openreseurope.16679.1"},{"key":"ref113","doi-asserted-by":"publisher","DOI":"10.1109\/SBAC-PAD59825.2023.00030"},{"key":"ref114","doi-asserted-by":"publisher","DOI":"10.12793\/tcp.2023.31.e9"},{"key":"ref115","doi-asserted-by":"publisher","DOI":"10.1002\/psp4.12812"}],"container-title":["IEEE Access"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/6287639\/10380310\/10596286.pdf?arnumber=10596286","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,25]],"date-time":"2024-07-25T17:36:45Z","timestamp":1721929005000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10596286\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024]]},"references-count":115,"URL":"https:\/\/doi.org\/10.1109\/access.2024.3427410","relation":{},"ISSN":["2169-3536"],"issn-type":[{"value":"2169-3536","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024]]}}}