{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,18]],"date-time":"2025-11-18T12:15:25Z","timestamp":1763468125803,"version":"3.28.0"},"reference-count":39,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,6]]},"DOI":"10.1109\/asap.2013.6567598","type":"proceedings-article","created":{"date-parts":[[2013,8,1]],"date-time":"2013-08-01T16:13:23Z","timestamp":1375373603000},"page":"329-338","source":"Crossref","is-referenced-by-count":6,"title":["A distributed CPU-GPU framework for pairwise alignments on large-scale sequence datasets"],"prefix":"10.1109","author":[{"given":"Da","family":"Li","sequence":"first","affiliation":[]},{"given":"Kittisak","family":"Sajjapongse","sequence":"additional","affiliation":[]},{"given":"Huan","family":"Truong","sequence":"additional","affiliation":[]},{"given":"Gavin","family":"Conant","sequence":"additional","affiliation":[]},{"given":"Michela","family":"Becchi","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"19","doi-asserted-by":"publisher","DOI":"10.1006\/anae.1998.0155"},{"key":"35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg192"},{"key":"17","doi-asserted-by":"publisher","DOI":"10.1038\/nrg1709"},{"key":"36","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl217"},{"key":"18","doi-asserted-by":"publisher","DOI":"10.1126\/science.1093857"},{"key":"33","doi-asserted-by":"crossref","DOI":"10.1186\/1756-0500-1-107","article-title":"SWPS3-fast multi-threaded vectorized Smith-Waterman for IBM Cell\/B.E. and x86\/SSE2","volume":"1","author":"szalkowski","year":"2008","journal-title":"BMC Res Notes"},{"key":"15","doi-asserted-by":"publisher","DOI":"10.1038\/415630a"},{"key":"34","first-page":"1","article-title":"Pairwise sequence alignment for very long sequences on GPUs","author":"li","year":"2012","journal-title":"Computational Advances in Bio and Medical Sciences (ICCABS)"},{"key":"16","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6941.2010.01029.x"},{"journal-title":"CUDA by Example An Introduction to General-Purpose GPU Programming","year":"2010","author":"sanders","key":"39"},{"key":"13","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00033-09"},{"key":"14","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syq037"},{"key":"37","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.89.22.10915"},{"key":"11","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1195"},{"key":"38","doi-asserted-by":"publisher","DOI":"10.1145\/360825.360861"},{"key":"12","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msq130"},{"key":"21","doi-asserted-by":"publisher","DOI":"10.1145\/1168919.1168898"},{"key":"20","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn879"},{"key":"22","doi-asserted-by":"publisher","DOI":"10.1109\/IISWC.2009.5306797"},{"journal-title":"Nvidia Applications Catalog","year":"0","key":"23"},{"key":"24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq644"},{"key":"25","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-474"},{"key":"26","first-page":"6","article-title":"MPI-HMMER-boost: Distributed FPGA acceleration","volume":"48","author":"walters","year":"2007","journal-title":"The Journal of VLSI Signla Processing Systems for Signal Image and Video Technology"},{"key":"27","doi-asserted-by":"publisher","DOI":"10.1186\/1756-0500-5-116"},{"key":"28","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-S2-S10"},{"key":"29","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2007.1069"},{"key":"3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.22.4673"},{"key":"2","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(81)90087-5"},{"key":"10","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(70)90057-4"},{"key":"30","doi-asserted-by":"publisher","DOI":"10.1109\/SAAHPC.2012.15"},{"key":"7","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1990.9999"},{"key":"6","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.85.8.2444"},{"key":"32","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-377"},{"key":"5","first-page":"418","article-title":"Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions","volume":"3","author":"nei","year":"1986","journal-title":"Molecular Biology and Evolution"},{"key":"31","doi-asserted-by":"publisher","DOI":"10.1186\/1756-0500-2-73"},{"journal-title":"Molecular Systematics Second Edition","year":"1996","author":"hillis","key":"4"},{"key":"9","doi-asserted-by":"publisher","DOI":"10.1101\/gr.078212.108"},{"key":"8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"}],"event":{"name":"2013 IEEE 24th International Conference on Application-specific Systems, Architectures and Processors (ASAP)","start":{"date-parts":[[2013,6,5]]},"location":"Washington, DC, USA","end":{"date-parts":[[2013,6,7]]}},"container-title":["2013 IEEE 24th International Conference on Application-Specific Systems, Architectures and Processors"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/6558539\/6567524\/06567598.pdf?arnumber=6567598","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,21]],"date-time":"2017-06-21T13:14:22Z","timestamp":1498050862000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/6567598\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,6]]},"references-count":39,"URL":"https:\/\/doi.org\/10.1109\/asap.2013.6567598","relation":{},"subject":[],"published":{"date-parts":[[2013,6]]}}}