{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T18:04:04Z","timestamp":1775325844969,"version":"3.50.1"},"reference-count":25,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,7]]},"DOI":"10.1109\/asap.2018.8445119","type":"proceedings-article","created":{"date-parts":[[2018,8,28]],"date-time":"2018-08-28T00:35:47Z","timestamp":1535416547000},"page":"1-8","source":"Crossref","is-referenced-by-count":12,"title":["FPGA-based PairHMM Forward Algorithm for DNA Variant Calling"],"prefix":"10.1109","author":[{"given":"Davide","family":"Sampietro","sequence":"first","affiliation":[]},{"given":"Chiara","family":"Crippa","sequence":"additional","affiliation":[]},{"given":"Lorenzo","family":"Di Tucci","sequence":"additional","affiliation":[]},{"given":"Emanuele","family":"Del Sozzo","sequence":"additional","affiliation":[]},{"given":"Marco D.","family":"Santambrogio","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref10","first-page":"11","article-title":"From fastq data to high-confidence variant calls: the genome analysis toolkit best practices pipeline","author":"van der auwera","year":"2013","journal-title":"Current Protocols in Bioinformatics"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511790492"},{"key":"ref12","author":"carneiro","year":"2013","journal-title":"Accelerating variant calling"},{"key":"ref13","first-page":"902","article-title":"Exploration of alternative gpu implementations of the pair-hmms forward algoritbm","author":"ren","year":"2016","journal-title":"Bioinformatics and Biomedicine (BIBM) 2016 IEEE International Conference on"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1177\/1176934318760543"},{"key":"ref15","article-title":"Accelerating genomics research with opencl and fpgas","author":"rauer","year":"2016","journal-title":"Altera Now Part of Intel Tech Rep"},{"key":"ref16","author":"rauer","year":"2017","journal-title":"Accelerating Genomics Research with OpenCL and FPGAs"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM.2015.7359892"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/CoolChips.2016.7503681"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"758","DOI":"10.1109\/BIBM.2016.7822616","article-title":"Maximizing systolic array efficiency to accelerate the pairhmm forward algorithm","author":"peltenburg","year":"2016","journal-title":"Bioinformatics and Biomedicine (BIBM) 2016 IEEE International Conference on"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1038\/nature15393","article-title":"A global reference for human genetic variation","volume":"526","year":"2015","journal-title":"Nature"},{"key":"ref3","first-page":"23579e","author":"mckee","year":"2016","journal-title":"Exac Revolutionizing rare disease diagnosis"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/MDAT.2013.2293757"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nature19057"},{"key":"ref8","first-page":"23579e","author":"hasan","year":"2011","journal-title":"An Overview of Hardware-Based Acceleration of Biological Sequence Alignment"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1155\/2012\/752910"},{"key":"ref2","author":"rode","year":"2005","journal-title":"Rare Diseases Understanding This Public Health Priority"},{"key":"ref9","author":"institute","year":"2014","journal-title":"HC overview How the HaplotypeCaller works"},{"key":"ref1","year":"1989","journal-title":"Report of the National Commission on Orphan Diseases"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.23919\/FPL.2017.8056837"},{"key":"ref22","author":"kane","year":"2016","journal-title":"Broad institute teams up with intel to integrate genomic data from diverse sources and enhance genomic data analytic capabilities"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1145\/3020078.3021749"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.23919\/DATE.2017.7927082"},{"key":"ref23","author":"carneiro","year":"0","journal-title":"Pairhmm test data"},{"key":"ref25","year":"0","journal-title":"Genomics kernel library (gkl)"}],"event":{"name":"2018 IEEE 29th International Conference on Application-specific Systems, Architectures and Processors (ASAP)","location":"Milan","start":{"date-parts":[[2018,7,10]]},"end":{"date-parts":[[2018,7,12]]}},"container-title":["2018 IEEE 29th International Conference on Application-specific Systems, Architectures and Processors (ASAP)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8424123\/8445082\/08445119.pdf?arnumber=8445119","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,26]],"date-time":"2022-01-26T06:24:09Z","timestamp":1643178249000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8445119\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,7]]},"references-count":25,"URL":"https:\/\/doi.org\/10.1109\/asap.2018.8445119","relation":{},"subject":[],"published":{"date-parts":[[2018,7]]}}}