{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,17]],"date-time":"2026-04-17T16:30:04Z","timestamp":1776443404625,"version":"3.51.2"},"reference-count":24,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,11]]},"DOI":"10.1109\/bibm.2014.6999309","type":"proceedings-article","created":{"date-parts":[[2015,1,20]],"date-time":"2015-01-20T02:42:30Z","timestamp":1421721750000},"page":"44-48","source":"Crossref","is-referenced-by-count":55,"title":["Fastq_clean: An optimized pipeline to clean the Illumina sequencing data with quality control"],"prefix":"10.1109","author":[{"given":"Mi","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Honghe","family":"Sun","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhangjun","family":"Fei","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Feng","family":"Zhan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiujun","family":"Gong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shan","family":"Gao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"19","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms5026"},{"key":"22","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"17","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-781"},{"key":"23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1219"},{"key":"18","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms3640"},{"key":"24","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr771"},{"key":"15","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3046"},{"key":"16","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2801"},{"key":"13","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-662"},{"key":"14","doi-asserted-by":"publisher","DOI":"10.1105\/tpc.114.124867"},{"key":"11","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/nature11119","article-title":"The tomato genome sequence provides insights into fleshy fruit evolution","volume":"485","author":"consortium","year":"2012","journal-title":"Nature"},{"key":"12","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1038\/ng.2470","article-title":"The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions","volume":"45","author":"guo","year":"2013","journal-title":"Nature Genetics"},{"key":"21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp450"},{"key":"3","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2986"},{"key":"20","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2013-14-12-r139"},{"key":"2","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1586\/erm.11.3","article-title":"Next-generation sequencing and its applications in molecular diagnostics","volume":"11","author":"su","year":"2011","journal-title":"Expert Review of Molecular Diagnostics"},{"key":"1","doi-asserted-by":"publisher","DOI":"10.1021\/ac2010857"},{"key":"10","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-341"},{"key":"7","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2011.05.009"},{"key":"6","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"5","article-title":"Fastx-toolkit","author":"gordon","year":"2010","journal-title":"FASTQ\/A Shortreads Pre-processing Tools"},{"key":"4","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1186\/1756-0500-5-337","article-title":"AdapterRemoval: Easy cleaning of nextgeneration sequencing reads","volume":"5","author":"lindgreen","year":"2012","journal-title":"BMC Res Notes"},{"key":"9","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1186\/1471-2105-11-38","article-title":"SeqTrim: A high-throughput pipeline for pre-processing any type of sequence read","volume":"11","author":"falgueras","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"8","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1186\/1756-0500-3-3","article-title":"CANGS: A userfriendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies","volume":"3","author":"pandey","year":"2010","journal-title":"BMC Research Notes"}],"event":{"name":"2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Belfast, United Kingdom","start":{"date-parts":[[2014,11,2]]},"end":{"date-parts":[[2014,11,5]]}},"container-title":["2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/6979782\/6999111\/06999309.pdf?arnumber=6999309","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,19]],"date-time":"2019-08-19T21:40:55Z","timestamp":1566250855000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/6999309\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,11]]},"references-count":24,"URL":"https:\/\/doi.org\/10.1109\/bibm.2014.6999309","relation":{},"subject":[],"published":{"date-parts":[[2014,11]]}}}