{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T12:16:07Z","timestamp":1760098567694,"version":"3.28.0"},"reference-count":40,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,11]]},"DOI":"10.1109\/bibm.2015.7359686","type":"proceedings-article","created":{"date-parts":[[2015,12,17]],"date-time":"2015-12-17T22:00:00Z","timestamp":1450389600000},"page":"234-241","source":"Crossref","is-referenced-by-count":2,"title":["petal: A novel co-expression network modeling system"],"prefix":"10.1109","author":[{"given":"Juli","family":"Petereit","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Frederick C.","family":"Harris","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karen","family":"Schlauch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1016\/j.ibmb.2014.08.002"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1016\/j.ibmb.2012.03.010"},{"journal-title":"R (Programming Language)","year":"2015","author":"ihaka","key":"ref33"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1089\/106652799318274"},{"year":"2015","author":"batagelj pajek","key":"ref31"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1101\/gr.1239303"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2013-14-3-r27"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-11-215"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2212"},{"journal-title":"igraph R-library","year":"2015","author":"gabor","key":"ref34"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbi.2010.04.012"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1534\/genetics.104.031500"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-328"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"1875","DOI":"10.1093\/jxb\/ern008","article-title":"Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)","volume":"59","author":"cushman","year":"2008","journal-title":"Journal of Experimental Botany"},{"article-title":"Applied statistics for applied biology, methods in systems biology","year":"2011","author":"dehmer","key":"ref14"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.2202\/1544-6115.1128"},{"article-title":"Networks: An Introduction","year":"2012","author":"newman","key":"ref16"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1126\/science.286.5439.509","article-title":"Emergence of scaling in random networks","volume":"286","author":"barab\u00e1si","year":"1999","journal-title":"Science"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1038\/30918","article-title":"Collective dynamics of &#x2018;small-world&#x2019; networks","volume":"393","author":"watts","year":"1998","journal-title":"Nature"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1038\/sj.embor.7400090"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1104\/pp.107.115535"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1038\/nrmicro2419","article-title":"Advantages and limitations of current network inference methods","volume":"8","author":"de","year":"2010","journal-title":"Nature Reviews Microbiology"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-91"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/nature06757"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000117"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq121"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1186\/s12920-015-0098-9"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0039498"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1004006"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-8137.2007.02028.x"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0067552"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/82360"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1186\/1752-0509-4-8"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1038\/nrg1272"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp632"},{"key":"ref24","article-title":"Six degrees: the science of a connected age","author":"watts","year":"2004","journal-title":"WW Norton & Company Inc"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"412","DOI":"10.1126\/science.1173299","article-title":"Scale-free networks: a decade and beyond","volume":"325","author":"barab\u00e1si","year":"2009","journal-title":"Science"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-559"},{"key":"ref25","first-page":"470","article-title":"Identification and evaluation of weak community structures in networks","author":"ruan","year":"2006","journal-title":"Proceedings of the Twenty-First National Conference on Artificial Intelligence"}],"event":{"name":"2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","start":{"date-parts":[[2015,11,9]]},"location":"Washington, DC, USA","end":{"date-parts":[[2015,11,12]]}},"container-title":["2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/7350074\/7359638\/07359686.pdf?arnumber=7359686","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,2]],"date-time":"2019-09-02T17:14:11Z","timestamp":1567444451000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7359686\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,11]]},"references-count":40,"URL":"https:\/\/doi.org\/10.1109\/bibm.2015.7359686","relation":{},"subject":[],"published":{"date-parts":[[2015,11]]}}}