{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,29]],"date-time":"2024-10-29T11:06:47Z","timestamp":1730200007012,"version":"3.28.0"},"reference-count":36,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1109\/bibm.2018.8621315","type":"proceedings-article","created":{"date-parts":[[2019,2,19]],"date-time":"2019-02-19T00:49:10Z","timestamp":1550537350000},"page":"260-264","source":"Crossref","is-referenced-by-count":0,"title":["A meta-analysis portal for human breast cancer transcriptomics data: BreastCancerVis"],"prefix":"10.1109","author":[{"given":"Petronela","family":"Buiga","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jamie","family":"Soul","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jean-Marc","family":"Schwartz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.18632\/oncotarget.6525"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2007-8-6-r123"},{"key":"ref31","first-page":"1362","article-title":"Expansion of the Gene Ontology knowledgebase and resources","volume":"2017","author":"consortium","year":"0","journal-title":"Nucleic Acids Res"},{"journal-title":"R Foundation for Statistical Computing","article-title":"R: A language and environment for statistical computing","year":"2013","key":"ref30"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.14348\/molcells.2017.0001"},{"key":"ref35","article-title":"Molecular basis of distinct oestrogen responses in endometrial and breast cancer","volume":"25","author":"baxter","year":"2018","journal-title":"Endocr Relat Cancer"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0072303"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1057"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/30.1.207"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-85"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-015-2100-5"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1038\/nrg2918","article-title":"Network medicine: a network-based approach to human disease","volume":"12","author":"al","year":"2011","journal-title":"Nat Rev Genet"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.pharmthera.2013.01.016"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1038\/srep08117"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"19d","DOI":"10.1093\/nar\/gkq1019","article-title":"International Nucleotide Sequence Database C: The sequence read archive","volume":"39","author":"leinonen","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"ref18","first-page":"525","article-title":"Near-optimal probabilistic RNA-seq quantification","volume":"34","author":"nl","year":"0","journal-title":"Nat Biotechnol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","article-title":"MultiQC: summarize analysis results for multiple tools and samples in a single report","volume":"32","author":"ewels","year":"0","journal-title":"Bioinformatics"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-5-100"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1186\/bcr2635"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.4463"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1002\/path.2407"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"31s","DOI":"10.1038\/ng1570","article-title":"Integrative analysis of the cancer transcriptome","volume":"37","author":"dr","year":"2005","journal-title":"Nat Genet"},{"key":"ref29","first-page":"2","article-title":"L1000CDS(2): LINCS L1000 characteristic direction signatures search engine","author":"duan","year":"2016","journal-title":"npj Syst Biol Appl"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrclinonc.2017.74"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa021967"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMsb1503104"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1038\/nature11412","article-title":"Comprehensive molecular portraits of human breast tumours","volume":"490","author":"cancer genome atlas","year":"2012","journal-title":"Nature"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2013-14-10-r110"},{"key":"ref1","first-page":"1","article-title":"A Dataset for Breast Cancer Histopathological Image Classification","author":"spanhol","year":"2015","journal-title":"IEEE Transactions on Biomedical Engineering"},{"key":"ref20","first-page":"4","article-title":"Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences","author":"soneson","year":"0","journal-title":"F1000Research"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"mi","year":"2014","journal-title":"Genome Biol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"882","DOI":"10.1093\/bioinformatics\/bts034","article-title":"The sva package for removing batch effects and other unwanted variation in high-throughput experiments","volume":"28","author":"jt","year":"2012","journal-title":"Bioinformatics"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0021800"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"14r","DOI":"10.1186\/gb-2010-11-2-r14","article-title":"Gene ontology analysis for RNA-seq: accounting for selection bias","volume":"11","author":"md","year":"2010","journal-title":"Genome Biol"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1093\/nar\/gkg034","article-title":"STRING: a database of predicted functional associations between proteins","volume":"31","author":"cv","year":"2003","journal-title":"Nucleic Acids Research"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1038\/s41540-018-0055-2"}],"event":{"name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","start":{"date-parts":[[2018,12,3]]},"location":"Madrid, Spain","end":{"date-parts":[[2018,12,6]]}},"container-title":["2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8609864\/8621069\/08621315.pdf?arnumber=8621315","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,24]],"date-time":"2020-08-24T00:27:29Z","timestamp":1598228849000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8621315\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,12]]},"references-count":36,"URL":"https:\/\/doi.org\/10.1109\/bibm.2018.8621315","relation":{},"subject":[],"published":{"date-parts":[[2018,12]]}}}