{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,2]],"date-time":"2025-08-02T04:11:57Z","timestamp":1754107917451,"version":"3.28.0"},"reference-count":37,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1109\/bibm.2018.8621485","type":"proceedings-article","created":{"date-parts":[[2019,2,28]],"date-time":"2019-02-28T22:32:01Z","timestamp":1551393121000},"page":"540-547","source":"Crossref","is-referenced-by-count":7,"title":["PENNER: Pattern-enhanced Nested Named Entity Recognition in Biomedical Literature"],"prefix":"10.1109","author":[{"given":"Xuan","family":"Wang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yu","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qi","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cathy H.","family":"Wu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jiawei","family":"Han","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1145\/3233547.3233594"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-6783-4_10"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1136\/amiajnl-2011-000203"},{"key":"ref30","first-page":"382","article-title":"Developing a robust part-of-speech tagger for biomedical text","author":"tsuruoka","year":"2005","journal-title":"Panhellenic Conference on Informatics"},{"key":"ref37","first-page":"473","article-title":"Named entity recognition using an hmm-based chunk tagger","author":"zhou","year":"2002","journal-title":"ACL&#x2019;"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt014"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"518w","DOI":"10.1093\/nar\/gkt441","article-title":"Pubtator: a web-based text mining tool for assisting biocuration","volume":"41","author":"wei","year":"2013","journal-title":"Nucleic Acids Research"},{"key":"ref34","first-page":"bty869","article-title":"Cross-type biomedical named entity recognition with deep multi-task learning","author":"wang","year":"2018","journal-title":"Bioinformatics"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1145\/3097983.3098105"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N18-1131"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N18-1079"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.3115\/1075096.1075150"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1186\/1758-2946-7-S1-S1"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N16-1030"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw343"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1145\/3219819.3220017"},{"key":"ref18","first-page":"994","article-title":"Cidextractor: A chemical-induced disease relation extraction system for biomedical literature","author":"li","year":"2016","journal-title":"BIBM&#x2019;16"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D15-1102"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"362d","DOI":"10.1093\/nar\/gkw937","article-title":"The string database in 2017: quality-controlled protein&#x2013;protein association networks, made broadly accessible","volume":"45","author":"szklarczyk","year":"2017","journal-title":"Nucleic Acids Research"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-017-1776-8"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/nn.4053"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh036"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.3115\/1699510.1699529"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv1277"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"972d","DOI":"10.1093\/nar\/gkw838","article-title":"The comparative toxicogenomics database: update 2017","volume":"45","author":"davis","year":"2016","journal-title":"Nucleic Acids Research"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx228"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1007\/BF00427507"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt1005-1243"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM.2015.7359816"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.3115\/1572392.1572404"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0189663"},{"key":"ref22","first-page":"3111","article-title":"Distributed representations of words and phrases and their compositionality","author":"mikolov","year":"2013","journal-title":"NIPS&#x2019;13"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-S1-S6"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1145\/2835776.2835808"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D17-1276"},{"key":"ref26","first-page":"288","article-title":"Setexpan: Corpusbased set expansion via context feature selection and rank ensemble","author":"shen","year":"2017","journal-title":"ECML-PKDD&#x2019;17"},{"journal-title":"Introduction to Information Retrieval","year":"2008","author":"sch\u00fctze","key":"ref25"}],"event":{"name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","start":{"date-parts":[[2018,12,3]]},"location":"Madrid, Spain","end":{"date-parts":[[2018,12,6]]}},"container-title":["2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8609864\/8621069\/08621485.pdf?arnumber=8621485","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,24]],"date-time":"2020-08-24T03:26:52Z","timestamp":1598239612000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8621485\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,12]]},"references-count":37,"URL":"https:\/\/doi.org\/10.1109\/bibm.2018.8621485","relation":{},"subject":[],"published":{"date-parts":[[2018,12]]}}}