{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,29]],"date-time":"2024-10-29T11:08:44Z","timestamp":1730200124146,"version":"3.28.0"},"reference-count":35,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1109\/bibm.2018.8621543","type":"proceedings-article","created":{"date-parts":[[2019,2,28]],"date-time":"2019-02-28T22:32:01Z","timestamp":1551393121000},"page":"1826-1831","source":"Crossref","is-referenced-by-count":4,"title":["Phylogeny-Aware Deep 1-Dimensional Convolutional Neural Network for the Classification of Metagenomes"],"prefix":"10.1109","author":[{"given":"Timmy","family":"Manning","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jyotsna Talreja","family":"Wassan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cintia","family":"Palu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haiying","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fiona","family":"Browne","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Huiru","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian","family":"Kelly","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Paul","family":"Walsh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref33","first-page":"1725","article-title":"A brief introduction to opencv","author":"culjak","year":"2012","journal-title":"MIPRO 2012 Proceedings of the 35th International Convention"},{"key":"ref32","article-title":"Adadelta: an adaptive learning rate method","author":"zeiler","year":"2012","journal-title":"arXiv preprint arXiv 1212 5701"},{"key":"ref31","first-page":"265","article-title":"Tensorflow: a system for largescale machine learning","volume":"16","author":"abadi","year":"2016","journal-title":"OSDI"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.21887"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-50-6-2207"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1109\/ICDAR.2003.1227801"},{"key":"ref10","article-title":"Recent advances in convolutional neural networks","author":"gu","year":"2015","journal-title":"arXiv preprint arXiv 1512 00327"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/5.726791"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/D14-1181"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV.2017.74"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmpb.2018.04.005"},{"key":"ref15","first-page":"851","article-title":"Deep learning in bioinformatics","volume":"18","author":"min","year":"2017","journal-title":"Briefings in Bioinformatics"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1007\/s10115-017-1140-3"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/EMBC.2017.8037799"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2017.119"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-5-r50"},{"key":"ref28","article-title":"A comprehensive study on predicting functional role of metagenomes using machine learning methods","author":"wassan","year":"2018","journal-title":"IEEE\/ACM Transactions on Computational Biology and Bioinformatics"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM.2016.7822518"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1186\/2049-2618-1-11"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1016\/j.trsl.2009.09.005"},{"key":"ref6","first-page":"421","article-title":"An integrative approach for the functional analysis of metagenomic studies","author":"wassan","year":"2017","journal-title":"International Conference on Intelligent Computing"},{"key":"ref29","first-page":"1","article-title":"Building predictive models in r using the caret package","volume":"28","author":"kuhn","year":"2008","journal-title":"Journal of Statistical Software Articles"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"2077","DOI":"10.1109\/BIBM.2017.8217980","article-title":"A metagenomics analysis of rumen microbiome","author":"walsh","year":"2017","journal-title":"Bioinformatics and Biomedicine (BIBM) 2017 IEEE International Conference"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/S0168-9525(01)02272-7"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1109\/CIBCB.2017.8058557"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004977"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"19","DOI":"10.11646\/zootaxa.1668.1.4","article-title":"The tree of life web project","volume":"1668","author":"maddison","year":"2007","journal-title":"Zootaxa"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genet.38.072902.091216"},{"key":"ref20","article-title":"Disease classification in metagenomics with 2d embeddings and deep learning","author":"nguyen","year":"2018","journal-title":"arXiv preprint arXiv 1806 09046"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1017\/S175173111700146X"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2033-5"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.5364"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00132"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3869"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.f.303"}],"event":{"name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","start":{"date-parts":[[2018,12,3]]},"location":"Madrid, Spain","end":{"date-parts":[[2018,12,6]]}},"container-title":["2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8609864\/8621069\/08621543.pdf?arnumber=8621543","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,24]],"date-time":"2020-08-24T04:43:14Z","timestamp":1598244194000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8621543\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,12]]},"references-count":35,"URL":"https:\/\/doi.org\/10.1109\/bibm.2018.8621543","relation":{},"subject":[],"published":{"date-parts":[[2018,12]]}}}