{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,7]],"date-time":"2026-05-07T17:00:13Z","timestamp":1778173213045,"version":"3.51.4"},"reference-count":27,"publisher":"IEEE","license":[{"start":{"date-parts":[[2023,12,5]],"date-time":"2023-12-05T00:00:00Z","timestamp":1701734400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,12,5]],"date-time":"2023-12-05T00:00:00Z","timestamp":1701734400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/100010002","name":"Ministry of Education","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100010002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,12,5]]},"DOI":"10.1109\/bibm58861.2023.10385497","type":"proceedings-article","created":{"date-parts":[[2024,1,18]],"date-time":"2024-01-18T18:27:43Z","timestamp":1705602463000},"page":"2883-2888","source":"Crossref","is-referenced-by-count":10,"title":["Cryptic binding site prediction with protein language models"],"prefix":"10.1109","author":[{"given":"V\u00edt","family":"\u0160krh\u00e1k","sequence":"first","affiliation":[{"name":"Charles University,Faculty of Mathematics and Physics,Department of Software Engineering,Prague,Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marian","family":"Novotn\u00fd","sequence":"additional","affiliation":[{"name":"Charles University,Faculty of Science,Department of Cell Biology,Prague,Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kamila","family":"Riedlova","sequence":"additional","affiliation":[{"name":"Charles University,Faculty of Mathematics and Physics,Department of Software Engineering,Prague,Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Hoksza","sequence":"additional","affiliation":[{"name":"Charles University,Faculty of Mathematics and Physics,Department of Software Engineering,Prague,Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cbpa.2018.05.003"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.drup.2023.100934"},{"key":"ref3","article-title":"Protein binding site comparison","volume-title":"Phd thesis","author":"Ehrt","year":"2019"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.suppl_1.S71"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr657"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.7b00307"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.3390\/genes10120965"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa174"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac106"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac236"},{"key":"ref11","article-title":"Prottrans: towards cracking the language of lifes code through self-supervised deep learning and high performance computing","author":"Elnaggar","year":"2021","journal-title":"IEEE transactions on pattern analysis and machine intelligence"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1109\/bibm55620.2022.9995025"},{"key":"ref13","first-page":"2023","article-title":"Hybrid protein-ligand binding residue prediction with protein language models: Does the structure matter?","author":"Gamouh","year":"2023","journal-title":"bioRxiv"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-168"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/s13321-018-0285-8"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx350"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-61860-z"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2016.01.029"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp163"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu739"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2016239118"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm895"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1002\/cpz1.113"},{"issue":"185","key":"ref24","first-page":"1","article-title":"Hyper-band: A novel bandit-based approach to hyperparameter optimization","volume-title":"Journal of Machine Learning Research","volume":"18","author":"Li","year":"2018"},{"key":"ref25","article-title":"Adam: A method for stochastic optimization","volume-title":"CoRR","author":"Kingma","year":"2014"},{"key":"ref26","year":"2015","journal-title":"The PyMOL molecular graphics system, version 1.8"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-36699-3"}],"event":{"name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Istanbul, Turkiye","start":{"date-parts":[[2023,12,5]]},"end":{"date-parts":[[2023,12,8]]}},"container-title":["2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/10385250\/10385251\/10385497.pdf?arnumber=10385497","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,26]],"date-time":"2024-03-26T19:38:02Z","timestamp":1711481882000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10385497\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,12,5]]},"references-count":27,"URL":"https:\/\/doi.org\/10.1109\/bibm58861.2023.10385497","relation":{},"subject":[],"published":{"date-parts":[[2023,12,5]]}}}