{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,29]],"date-time":"2026-06-29T11:30:37Z","timestamp":1782732637228,"version":"3.54.5"},"reference-count":40,"publisher":"IEEE","license":[{"start":{"date-parts":[[2024,12,3]],"date-time":"2024-12-03T00:00:00Z","timestamp":1733184000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,12,3]],"date-time":"2024-12-03T00:00:00Z","timestamp":1733184000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100000288","name":"Royal Society","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000288","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,12,3]]},"DOI":"10.1109\/bibm62325.2024.10822388","type":"proceedings-article","created":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T20:12:45Z","timestamp":1736539965000},"page":"864-871","source":"Crossref","is-referenced-by-count":2,"title":["Pathway Activity Autoencoders for Enhanced Omics Analysis and Clinical Interpretability"],"prefix":"10.1109","author":[{"given":"Pedro Henrique","family":"da Costa Avelar","sequence":"first","affiliation":[{"name":"King&#x2019;s College London,Department of Informatics,London,United Kingdom,WC2B 4BG"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Le","family":"Ou-Yang","sequence":"additional","affiliation":[{"name":"Shenzhen University,College of Electronics and Information Engineering,Shenzhen,China,518054"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Wu","sequence":"additional","affiliation":[{"name":"Institute for Infocomm Research, Agency for Science, Technology and Research (A*STAR),Singapore,138632"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sophia","family":"Tsoka","sequence":"additional","affiliation":[{"name":"King&#x2019;s College London,Department of Informatics,London,United Kingdom,WC2B 4BG"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/s42003-021-02622-z"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-81773-9"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1158\/1078-0432.CCR-17-0853"},{"key":"ref4","article-title":"Multi-omics and deep learning provide a multifaceted view of cancer","author":"Uyar","year":"2021","journal-title":"tech. rep."},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab508"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1006076"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2022.104026"},{"key":"ref8","first-page":"4765","article-title":"A Unified Approach to Interpreting Model Predictions","volume-title":"NeurIPS 2017, December 4 - 9, 2017","author":"Lundberg"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N16-3020"},{"key":"ref10","article-title":"Optimisation-based modelling for drug discovery in malaria","author":"Li","year":"2022","journal-title":"preprint, Bioinformatics"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2023.106544"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.3390\/jpm14040410"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.26508\/lsa.201900517"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-58"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1219651110"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-126"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1038\/s43018-020-00159-4"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/nature25171"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-61527-7_17"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-014-0390-2"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.3390\/cancers15061787"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2019.06.017"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-020-3465-2"},{"key":"ref24","article-title":"pmVAE: Learning Interpretable Single-Cell Representations with Pathway Modules","author":"Gut","year":"2021","journal-title":"preprint, Bioinformatics"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2018.00477"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.3390\/biom10040524"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiolchem.2020.107277"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-021-00930-x"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2021.104481"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2022.105832"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2020.103466"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1016\/j.nbt.2023.06.002"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1038\/nature11412"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1038\/nature10983"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1200\/JCO.2008.18.1370"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1126\/science.1127647"},{"key":"ref37","article-title":"Auto-Encoding Variational Bayes","volume-title":"2nd International Conference on Learning Representations, ICLR 2014, Banff, AB, Canada, April 14-16, 2014, Conference Track Proceedings","author":"Kingma"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab303"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-10590-1_53"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-031-25891-6_5"}],"event":{"name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Lisbon, Portugal","start":{"date-parts":[[2024,12,3]]},"end":{"date-parts":[[2024,12,6]]}},"container-title":["2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10821710\/10821711\/10822388.pdf?arnumber=10822388","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,11]],"date-time":"2025-01-11T10:17:31Z","timestamp":1736590651000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10822388\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,12,3]]},"references-count":40,"URL":"https:\/\/doi.org\/10.1109\/bibm62325.2024.10822388","relation":{},"subject":[],"published":{"date-parts":[[2024,12,3]]}}}