{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T15:30:09Z","timestamp":1772119809539,"version":"3.50.1"},"reference-count":35,"publisher":"IEEE","license":[{"start":{"date-parts":[[2024,12,3]],"date-time":"2024-12-03T00:00:00Z","timestamp":1733184000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,12,3]],"date-time":"2024-12-03T00:00:00Z","timestamp":1733184000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,12,3]]},"DOI":"10.1109\/bibm62325.2024.10822800","type":"proceedings-article","created":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T20:12:45Z","timestamp":1736539965000},"page":"2317-2324","source":"Crossref","is-referenced-by-count":2,"title":["Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval"],"prefix":"10.1109","author":[{"given":"Zijun","family":"Min","sequence":"first","affiliation":[{"name":"Xiamen University,School of Informatics,Xiamen,China"}]},{"given":"Bingshuai","family":"Liu","sequence":"additional","affiliation":[{"name":"Xiamen University,School of Informatics,Xiamen,China"}]},{"given":"Liang","family":"Zhang","sequence":"additional","affiliation":[{"name":"Xiamen University,School of Informatics,Xiamen,China"}]},{"given":"Jia","family":"Song","sequence":"additional","affiliation":[{"name":"Xiamen University,School of Informatics,Xiamen,China"}]},{"given":"Jinsong","family":"Su","sequence":"additional","affiliation":[{"name":"Xiamen University,School of Informatics,Xiamen,China"}]},{"given":"Song","family":"He","sequence":"additional","affiliation":[{"name":"Institute of Health Service and Transfusion Medicine,Beijing,China"}]},{"given":"Xiaochen","family":"Bo","sequence":"additional","affiliation":[{"name":"Institute of Health Service and Transfusion Medicine,Beijing,China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv951"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2021.emnlp-main.47"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-28494-3"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2022.emnlp-main.26"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2023.acl-short.138"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1021\/ci00057a005"},{"key":"ref7","article-title":"A molecular multimodal foundation model associating molecule graphs with natural language","author":"Su","year":"2022"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-023-00759-6"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/TAI.2023.3254518"},{"key":"ref10","article-title":"Atomas: Hierarchical alignment on molecule-text for unified molecule understanding and generation","author":"Zhang","year":"2024"},{"key":"ref11","first-page":"6140","article-title":"Unifying molecular and textual representations via multitask language modelling","volume-title":"International Conference on Machine Learning","author":"Christofidellis"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2023.emnlp-main.966"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM62325.2024.10821722"},{"key":"ref14","article-title":"Molfm: A multimodal molecular foundation model","author":"Luo","year":"2023"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2024.108073"},{"key":"ref16","article-title":"Towards 3d molecule-text interpretation in language models","author":"Li","year":"2024"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/d18-1380"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/TCYB.2018.2868982"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v31i1.10969"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D15-1146"},{"key":"ref21","first-page":"3071","article-title":"Convolution-enhanced bilingual recursive neural network for bilingual semantic modeling","volume-title":"Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers","author":"Su"},{"key":"ref22","first-page":"2548","article-title":"Bilingual autoencoders with global descriptors for modeling parallel sentences","volume-title":"Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers","author":"Zhang"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1145\/3503161.3547910"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.24963\/ijcai.2023\/104"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV51070.2023.00264"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D19-1371"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/s42004-023-00825-5"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1002\/cmdc.200800178"},{"key":"ref29","article-title":"Semi-supervised classification with graph convolutional networks","author":"Kipf","year":"2016"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1561\/2200000073"},{"key":"ref31","article-title":"Differential properties of sinkhorn approximation for learning with wasserstein distance","volume-title":"Advances in Neural Information Processing Systems","volume":"31","author":"Luise"},{"key":"ref32","first-page":"433","article-title":"A fast proximal point method for computing exact wasserstein distance","volume-title":"Proceedings of The 35th Uncertainty in Artificial Intelligence Conference","volume":"115","author":"Xie"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1145\/380995.381002"},{"key":"ref34","article-title":"Rdkit: Open-source cheminformatics"},{"key":"ref35","article-title":"Adam: A method for stochastic optimization","author":"Kingma","year":"2014"}],"event":{"name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Lisbon, Portugal","start":{"date-parts":[[2024,12,3]]},"end":{"date-parts":[[2024,12,6]]}},"container-title":["2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10821710\/10821711\/10822800.pdf?arnumber=10822800","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,14]],"date-time":"2025-01-14T19:42:07Z","timestamp":1736883727000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10822800\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,12,3]]},"references-count":35,"URL":"https:\/\/doi.org\/10.1109\/bibm62325.2024.10822800","relation":{},"subject":[],"published":{"date-parts":[[2024,12,3]]}}}