{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T21:47:08Z","timestamp":1770846428427,"version":"3.50.1"},"reference-count":24,"publisher":"IEEE","license":[{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32300554,62176164"],"award-info":[{"award-number":["32300554,62176164"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,12,15]]},"DOI":"10.1109\/bibm66473.2025.11356471","type":"proceedings-article","created":{"date-parts":[[2026,1,29]],"date-time":"2026-01-29T21:19:40Z","timestamp":1769721580000},"page":"1775-1778","source":"Crossref","is-referenced-by-count":0,"title":["Predicting Gene Regulatory Relationship in Cancer Using LLM and Graph Neural Network from Known Regulations"],"prefix":"10.1109","author":[{"given":"Yanran","family":"Liu","sequence":"first","affiliation":[{"name":"City University of Hong Kong,Department of Information Systems,Kowloon, Hong Kong,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dian","family":"Meng","sequence":"additional","affiliation":[{"name":"Yong Loo Lin School of Medicine, National University of Singapore,Department of Biomedical Informatics,Singapore"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xinlei","family":"Huang","sequence":"additional","affiliation":[{"name":"School of Computing and Information Technology, Great Bay University,Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Dongguan Key Laboratory for Intelligence and Information Technology,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yidi","family":"Wang","sequence":"additional","affiliation":[{"name":"University of Macau,State Key Laboratory of Internet of Things for Smart City,Department of Computer and Information Science,Macao,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yijun","family":"Zhou","sequence":"additional","affiliation":[{"name":"School of Computing and Information Technology, Great Bay University,Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Dongguan Key Laboratory for Intelligence and Information Technology,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shiwei","family":"Ruan","sequence":"additional","affiliation":[{"name":"School of Computing and Information Technology, Great Bay University,Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Dongguan Key Laboratory for Intelligence and Information Technology,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi","family":"Zhong","sequence":"additional","affiliation":[{"name":"School of Computing and Information Technology, Great Bay University,Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Dongguan Key Laboratory for Intelligence and Information Technology,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yinghua","family":"Chen","sequence":"additional","affiliation":[{"name":"Dongguan People's Hospital Biobank, The Tenth Affiliated Hospital of Southern Medical University,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rui","family":"Luo","sequence":"additional","affiliation":[{"name":"City University of Hong Kong,Department of Systems Engineering,Kowloon, Hong Kong,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xubin","family":"Zheng","sequence":"additional","affiliation":[{"name":"School of Computing and Information Technology, Great Bay University,Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Dongguan Key Laboratory for Intelligence and Information Technology,Dongguan,China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"issue":"1","key":"ref1","first-page":"63","article-title":"Reconstructing gene regulatory networks from single-cell data for identifying disease-related genes and cell types","volume":"10","author":"Kuipers","year":"2018","journal-title":"Genome Medicine"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac379"},{"key":"ref3","first-page":"11","article-title":"Gene regulatory network inference: a systematic comparison of methods and data","volume":"7","author":"Emmert-Streib","year":"2016","journal-title":"Frontiers in genetics"},{"key":"ref4","first-page":"295","article-title":"Literature-based discovery of gene regulatory networks","volume":"804","author":"Rohn","year":"2012","journal-title":"Methods in molecular biology (Clifton, N.J.)"},{"issue":"5","key":"ref5","first-page":"301","article-title":"Manual curation of biomedical literature: a user\u2019s perspective","volume":"8","author":"Baumgartner","year":"2007","journal-title":"Briefings in bioinformatics"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/nrm2503"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-2598-7"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.18653\/vl\/N19-142"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz682"},{"key":"ref10","first-page":"3615","article-title":"SciBERT: A Pretrained Language Model for Scientific Text","volume-title":"Proc. 2019 Conf. Empirical Methods Natural Language Processing and 9th Int. Joint Conf. Natural Language Processing (EMNLP-IJCNLP)","author":"Beltagy","year":"2019"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btad109"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-S1-S6"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1016\/j.physa.2010.11.027"},{"key":"ref14","article-title":"Semi-supervised classification with graph convolutional networks","volume-title":"Int. Conf. Learning Representations (ICLR)","author":"Kipf","year":"2017"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.aiopen.2021.01.001"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v39i1.32010"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-47426-3_22"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v35i1.16093"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1137\/1.9781611977172.28"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v37i6.25919"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaf010"},{"key":"ref22","first-page":"40:140:17","article-title":"MSGNN: A Spectral Graph Neural Network Based on a Novel Magnetic Signed Laplacian","volume-title":"Learning on Graphs Conference (LoG)","author":"He","year":"2022"},{"issue":"3","key":"ref23","first-page":"353","article-title":"Spectrum of the Magnetic Laplacian","volume":"17","author":"Chung","year":"1993","journal-title":"Journal of Graph Theory"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1012083"}],"event":{"name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Wuhan, China","start":{"date-parts":[[2025,12,15]]},"end":{"date-parts":[[2025,12,18]]}},"container-title":["2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/11355913\/11355975\/11356471.pdf?arnumber=11356471","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T20:53:25Z","timestamp":1770843205000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11356471\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,12,15]]},"references-count":24,"URL":"https:\/\/doi.org\/10.1109\/bibm66473.2025.11356471","relation":{},"subject":[],"published":{"date-parts":[[2025,12,15]]}}}