{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T21:48:52Z","timestamp":1770846532385,"version":"3.50.1"},"reference-count":33,"publisher":"IEEE","license":[{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,12,15]]},"DOI":"10.1109\/bibm66473.2025.11356605","type":"proceedings-article","created":{"date-parts":[[2026,1,29]],"date-time":"2026-01-29T21:19:40Z","timestamp":1769721580000},"page":"493-498","source":"Crossref","is-referenced-by-count":0,"title":["scDiformer: A Difference-Aware Transformer for Time-Series Single-Cell Gene Expression Forecasting"],"prefix":"10.1109","author":[{"given":"Xinyue","family":"Gu","sequence":"first","affiliation":[{"name":"Fudan University,Shanghai Key Lab of Intelligent Information Processing, College of Computer Science and Artificial Intelligence,Shanghai,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jiayi","family":"Dong","sequence":"additional","affiliation":[{"name":"Fudan University,Shanghai Key Lab of Intelligent Information Processing, College of Computer Science and Artificial Intelligence,Shanghai,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jiahao","family":"Li","sequence":"additional","affiliation":[{"name":"Fudan University,Shanghai Key Lab of Intelligent Information Processing, College of Computer Science and Artificial Intelligence,Shanghai,China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fei","family":"Wang","sequence":"additional","affiliation":[{"name":"Fudan University,Shanghai Key Lab of Intelligent Information Processing, College of Computer Science and Artificial Intelligence,Shanghai,China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-23518-w"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-023-00679-5"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1126\/science.abe6474"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-24010-1"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/s43588-024-00625-4"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-024-02353-z"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/s41576-021-00444-7"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-023-00763-w"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1008205"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1145\/3641284"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac227"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-023-02988-9"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-020-0591-3"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-025-02608-3"},{"key":"ref15","first-page":"9526","article-title":"Trajectorynet: A dynamic optimal transport network for modeling cellular dynamics","volume-title":"International conference on machine learning. PMLR","author":"Tong","year":"2020"},{"key":"ref16","first-page":"29705","article-title":"Manifold interpolating optimal-transport flows for trajectory inference","volume":"35","author":"Huguet","year":"2022","journal-title":"Advances in neural information processing systems"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae400"},{"key":"ref18","article-title":"Learning collective multicellular dynamics from temporal scrna-seq via a transformer-enhanced neural sde","author":"Jiang","year":"2025","journal-title":"arXiv preprint"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2019.01.006"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.48550\/ARXIV.1706.03762"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1016\/j.neucom.2023.127063"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v38i1.27763"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.18653\/vl\/N19-142"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1126\/science.aar3131"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1126\/science.abn5800"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-019-1168-5"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1126\/science.aar4362"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae393"},{"key":"ref29","article-title":"Sinkhorn distances: Lightspeed computation of optimal transport","volume":"26","author":"Cuturi","year":"2013","journal-title":"Advances in neural information processing systems"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v35i12.17325"},{"key":"ref31","article-title":"Neural ordinary differential equations","volume":"31","author":"Chen","year":"2018","journal-title":"Advances in neural information processing systems"},{"key":"ref32","article-title":"Adam: A method for stochastic optimization","author":"Kingma","year":"2014","journal-title":"arXiv preprint"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1003014"}],"event":{"name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Wuhan, China","start":{"date-parts":[[2025,12,15]]},"end":{"date-parts":[[2025,12,18]]}},"container-title":["2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/11355913\/11355975\/11356605.pdf?arnumber=11356605","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T20:53:41Z","timestamp":1770843221000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11356605\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,12,15]]},"references-count":33,"URL":"https:\/\/doi.org\/10.1109\/bibm66473.2025.11356605","relation":{},"subject":[],"published":{"date-parts":[[2025,12,15]]}}}