{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T21:53:45Z","timestamp":1770846825167,"version":"3.50.1"},"reference-count":24,"publisher":"IEEE","license":[{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,12,15]],"date-time":"2025-12-15T00:00:00Z","timestamp":1765756800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001321","name":"National Research Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001321","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100014188","name":"MSIT","doi-asserted-by":"publisher","award":["RS-2023-00229822"],"award-info":[{"award-number":["RS-2023-00229822"]}],"id":[{"id":"10.13039\/501100014188","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,12,15]]},"DOI":"10.1109\/bibm66473.2025.11356833","type":"proceedings-article","created":{"date-parts":[[2026,1,29]],"date-time":"2026-01-29T21:19:40Z","timestamp":1769721580000},"page":"6929-6935","source":"Crossref","is-referenced-by-count":0,"title":["TheProtein: Evolutionarily Informed Graph-Surface Protein Representation"],"prefix":"10.1109","author":[{"given":"Seungyong","family":"Lee","sequence":"first","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Seungyeon","family":"Choi","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Hwanhee","family":"Kim","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Hyoungjoon","family":"Park","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Yoonju","family":"Kim","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Hyunseo","family":"Yang","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]},{"given":"Sanghyun","family":"Park","sequence":"additional","affiliation":[{"name":"Yonsei University,Department of Computer Science,Seoul,Republic of Korea"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-021-03819-2"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae413"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1126\/science.ade2574"},{"key":"ref4","first-page":"9323","article-title":"E (n) equivariant graph neural networks","volume-title":"International conference on machine learning. PMLR","author":"Satorras","year":"2021"},{"key":"ref5","article-title":"Atomsurf: Surface representation for learning on protein structures","author":"Mallet","year":"2023","journal-title":"arXiv preprint"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR46437.2021.01502"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.48550\/ARXIV.1706.03762"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0282(199603)38:3<305::AID-BIP4>3.0.CO;2-Y"},{"key":"ref9","article-title":"Learning hierarchical protein representations via complete 3d graph networks","author":"Wang","year":"2022","journal-title":"arXiv preprint"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1145\/3507905"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1002\/bip.360221211"},{"key":"ref12","first-page":"1263","article-title":"Neural message passing for quantum chemistry","volume-title":"International conference on machine learning. Pmlr","author":"Gilmer","year":"2017"},{"key":"ref13","article-title":"Atom3d: Tasks on molecules in three dimensions","author":"Townshend","year":"2020","journal-title":"arXiv preprint"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-019-0666-6"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae405"},{"key":"ref16","article-title":"Learning from protein structure with geometric vector perceptrons","author":"Jing","year":"2020","journal-title":"arXiv preprint"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1002\/pro.4541"},{"key":"ref18","article-title":"A systematic study of joint representation learning on protein sequences and structures","author":"Zhang","year":"2023","journal-title":"arXiv preprint"},{"key":"ref19","article-title":"Continuous-discrete convolution for geometry-sequence modeling in proteins","volume-title":"The Eleventh International Conference on Learning Representations","author":"Fan","year":"2022"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-021-00438-4"},{"key":"ref21","first-page":"43496","article-title":"Pre-training protein encoder via siamese sequence-structure diffusion trajectory prediction","volume":"36","author":"Zhang","year":"2023","journal-title":"Advances in Neural Information Processing Systems"},{"key":"ref22","author":"Wang","journal-title":"Proteinadapter: Adapting pre-trained large protein models for efficient protein representation learning"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac381"},{"key":"ref24","article-title":"Learning harmonic molecular representations on riemannian manifold","author":"Wang","year":"2023","journal-title":"arXiv preprint"}],"event":{"name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","location":"Wuhan, China","start":{"date-parts":[[2025,12,15]]},"end":{"date-parts":[[2025,12,18]]}},"container-title":["2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/11355913\/11355975\/11356833.pdf?arnumber=11356833","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T20:54:29Z","timestamp":1770843269000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11356833\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,12,15]]},"references-count":24,"URL":"https:\/\/doi.org\/10.1109\/bibm66473.2025.11356833","relation":{},"subject":[],"published":{"date-parts":[[2025,12,15]]}}}