{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T15:47:21Z","timestamp":1729612041267,"version":"3.28.0"},"reference-count":29,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,12]]},"DOI":"10.1109\/bibmw.2010.5703859","type":"proceedings-article","created":{"date-parts":[[2011,1,28]],"date-time":"2011-01-28T20:12:31Z","timestamp":1296245551000},"page":"543-548","source":"Crossref","is-referenced-by-count":3,"title":["On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment"],"prefix":"10.1109","author":[{"given":"Zhihui","family":"Du","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhaoming","family":"Yin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wenjie","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Bader","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref10","first-page":"791","volume":"22","author":"nageswaran","year":"2009","journal-title":"A configurable simulation environment for the efficient simulation of large-scale spiking neural networks on graphics processors"},{"journal-title":"Acceleration of Spiking Neural Networks in Emerging Multi-core and GPU Architectures In HiComb 2010","year":"2010","author":"bhuiyan","key":"ref11"},{"journal-title":"An Introduction to Graphical Models","year":"2001","author":"murphy","key":"ref12"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/5.18626"},{"journal-title":"Log-linear Models and Conditional Random Fields ACM 17th Conference on Information and Knowledge Management tutorial","year":"2008","key":"ref14"},{"key":"ref15","first-page":"188","article-title":"GPU Accelerate Smith-Waterman","author":"liu","year":"2006","journal-title":"Proc Int'l Conf Computational Science (ICC 06)"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/BIBE.2008.4696721"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-S2-S10"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/SC.2005.18"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1145\/1186562.1015800"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1517\/14622416.3.1.131"},{"key":"ref4","first-page":"1185","article-title":"Semi-Markov conditional random fields for information extraction","volume":"17","author":"sarawagi","year":"2005","journal-title":"Advances in neural information processing systems"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.3115\/1118693.1118694"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.3115\/1073445.1073473"},{"journal-title":"Bishop Neural Networks for Pattern Recognition","year":"0","author":"christopher","key":"ref6"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/12.2.135"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1142\/9789812776136_0062"},{"key":"ref8","article-title":"Parallel information extraction on shared memory multi-processor system","author":"shan","year":"2006","journal-title":"Proc of International Conference on Parallel Processing"},{"journal-title":"Perceptrons","year":"1969","author":"minsky","key":"ref7"},{"key":"ref2","article-title":"Efficiently inducing features of conditional random fields","author":"mccallum","year":"2003","journal-title":"Proceedings of Conferences on Uncertainty in Artificial Intelligence"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1007\/11732990_15"},{"key":"ref1","first-page":"282","article-title":"Conditional random fields: Probabilistic models for segmenting and labeling sequence data","author":"lafferty","year":"2001","journal-title":"Proc 18th International Conf on Machine Learning"},{"key":"ref20","article-title":"A Tile-based Parallel Viterbi Algorithm for Biological Sequence Alignment on GPU with CUDA","author":"du","year":"2010","journal-title":"IEEE International Parallel and Distributed Processing Symposium (IPDPS)—HiComb Workshop"},{"key":"ref22","first-page":"39","article-title":"A maximum entropy approach to natural language processing","volume":"22","author":"berger","year":"1996","journal-title":"Computational Linguistics"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(81)90087-5"},{"key":"ref24","doi-asserted-by":"crossref","DOI":"10.1145\/1345206.1345220","article-title":"Optimization Principles and Application Performance Evaluation Of a Multithreaded GPU Using CUDA","author":"ryoo","year":"2008","journal-title":"Proceedings of the 13th ACM SIGPLAN Symposium on Principles and practice of parallel programming Salt Lake City"},{"journal-title":"Classical probabilistic models and conditional random fields","year":"2007","author":"klinger","key":"ref23"},{"key":"ref26","first-page":"591","article-title":"Maximum Entropy Markov Models for Information Extraction and Segmentation","author":"mccallum","year":"2000","journal-title":"Proc Seventh Int Conf Machine Learning"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/14.2.157"}],"event":{"name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","start":{"date-parts":[[2010,12,18]]},"location":"HongKong, China","end":{"date-parts":[[2010,12,18]]}},"container-title":["2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx5\/5695144\/5703537\/05703859.pdf?arnumber=5703859","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,11,18]],"date-time":"2021-11-18T06:49:07Z","timestamp":1637218147000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/5703859\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,12]]},"references-count":29,"URL":"https:\/\/doi.org\/10.1109\/bibmw.2010.5703859","relation":{},"subject":[],"published":{"date-parts":[[2010,12]]}}}