{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,29]],"date-time":"2024-10-29T11:11:07Z","timestamp":1730200267154,"version":"3.28.0"},"reference-count":56,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,11]]},"DOI":"10.1109\/bibmw.2011.6112365","type":"proceedings-article","created":{"date-parts":[[2011,12,29]],"date-time":"2011-12-29T21:04:41Z","timestamp":1325192681000},"page":"130-136","source":"Crossref","is-referenced-by-count":5,"title":["QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads"],"prefix":"10.1109","author":[{"given":"Austin","family":"Huang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rami","family":"Kantor","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allison","family":"DeLong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leeann","family":"Schreier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sorin","family":"Istrail","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"35","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.1995.2.291"},{"key":"36","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0000484"},{"key":"33","doi-asserted-by":"publisher","DOI":"10.1109\/MC.2002.1016901"},{"key":"34","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0307971100"},{"key":"39","doi-asserted-by":"publisher","DOI":"10.1101\/gr.7088808"},{"key":"37","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"},{"key":"38","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.171285098"},{"key":"43","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0013564"},{"key":"42","doi-asserted-by":"publisher","DOI":"10.1142\/9789814335058_0010"},{"key":"41","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/3.1.23"},{"key":"40","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-12683-3_22"},{"key":"22","doi-asserted-by":"publisher","DOI":"10.1089\/aid.2007.0045"},{"key":"23","doi-asserted-by":"publisher","DOI":"10.1101\/gr.6468307"},{"key":"24","doi-asserted-by":"publisher","DOI":"10.1097\/QAD.0b013e32832b4399"},{"key":"25","doi-asserted-by":"publisher","DOI":"10.1016\/j.coviro.2011.07.008"},{"key":"26","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0010952"},{"key":"27","article-title":"A multicentre collaborative study on HIV drug resistance testing using 454 massively parallel pyrosequencing","volume":"15","author":"simen","year":"2010","journal-title":"Antiviral Therapy"},{"key":"28","doi-asserted-by":"publisher","DOI":"10.1086\/597808"},{"key":"29","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000074"},{"key":"3","doi-asserted-by":"publisher","DOI":"10.2217\/hiv.09.30"},{"key":"2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0004724"},{"key":"1","first-page":"266","article-title":"Update of the drug resistance mutations in HIV-1: December 2009","volume":"47","author":"johnson","year":"2008","journal-title":"Clin Infect Dis"},{"key":"7","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pmed.0020112"},{"key":"30","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-79450-9_15"},{"key":"6","doi-asserted-by":"publisher","DOI":"10.1038\/464673c"},{"key":"5","doi-asserted-by":"publisher","DOI":"10.1097\/01.qai.0000145351.96815.d5"},{"key":"32","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-119"},{"key":"4","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg100"},{"journal-title":"Inferring Genomic Sequences","year":"2011","author":"astrovskaya","key":"31"},{"key":"9","article-title":"First-line antiretroviral treatment effects on resistance mutation prevalence in HIV-1 subtypes","author":"huang","year":"0","journal-title":"6th IAS Conference on HIV Pathogenesis Treatment and Prevention 2011"},{"key":"8","article-title":"Stratification by HIV-1 subtype does not eliminate systematic geographical variation","volume":"15","author":"huang","year":"2010","journal-title":"Antiviral Therapy"},{"key":"56","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2009.0164"},{"key":"19","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.43.1.406-413.2005"},{"journal-title":"HIV Molecular Immunology Compendium 2006\/2007","year":"2007","author":"korber","key":"55"},{"key":"17","first-page":"93109","article-title":"Minority report: Hidden memory genomes in HIV-1 quasispecies and possible clinical implications","volume":"10","author":"briones","year":"2008","journal-title":"AIDS Rev"},{"key":"18","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0005683"},{"key":"15","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.1996.0231"},{"key":"16","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2006.07.037"},{"key":"13","doi-asserted-by":"publisher","DOI":"10.1126\/science.7824947"},{"key":"14","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2583"},{"key":"11","doi-asserted-by":"publisher","DOI":"10.1089\/aid.1996.12.307"},{"key":"12","first-page":"344","article-title":"HIV-1 isolates are rapidly evolving quasispecies: Evidence for viral mixtures and preferred nucleotide substitutions","volume":"2","author":"goodenow","year":"1989","journal-title":"JAIDS Journal of Acquired Immune Deficiency Syndromes"},{"key":"21","doi-asserted-by":"publisher","DOI":"10.1097\/01.qai.0000234083.34161.55"},{"key":"20","doi-asserted-by":"publisher","DOI":"10.1097\/01.aids.0000163942.93563.fd"},{"key":"49","first-page":"102","article-title":"Numbering positions in HIV relative to HXB2CG","volume":"3","author":"korber","year":"1998","journal-title":"AIDS Res Hum Retroviruses"},{"year":"0","author":"shul","key":"48"},{"key":"45","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr344"},{"key":"44","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq655"},{"key":"47","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq153"},{"journal-title":"Accurate Sampling and Deep Sequencing HIV-1 Protease Using Primer ID","year":"2011","author":"jabara","key":"46"},{"key":"10","doi-asserted-by":"publisher","DOI":"10.1038\/373123a0"},{"key":"51","doi-asserted-by":"publisher","DOI":"10.1002\/9781118032497"},{"key":"52","doi-asserted-by":"publisher","DOI":"10.1145\/362342.362367"},{"key":"53","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1007\/BFb0017464","article-title":"Programming constraint inference engines","author":"schulte","year":"1997","journal-title":"Principles and Practice of Constraint Programming-CP97"},{"key":"54","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.44.9.2475-2484.2000"},{"journal-title":"Computers and Intractability A Guide to the Theory of NP-Completeness","year":"1979","author":"garey","key":"50"}],"event":{"name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","start":{"date-parts":[[2011,11,12]]},"location":"Atlanta, GA","end":{"date-parts":[[2011,11,15]]}},"container-title":["2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx5\/6105661\/6112342\/06112365.pdf?arnumber=6112365","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T22:44:53Z","timestamp":1592433893000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/6112365\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,11]]},"references-count":56,"URL":"https:\/\/doi.org\/10.1109\/bibmw.2011.6112365","relation":{},"subject":[],"published":{"date-parts":[[2011,11]]}}}