{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T17:57:47Z","timestamp":1729619867045,"version":"3.28.0"},"reference-count":53,"publisher":"IEEE Comput. Soc","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1109\/csb.2003.1227328","type":"proceedings-article","created":{"date-parts":[[2004,3,30]],"date-time":"2004-03-30T22:17:26Z","timestamp":1080685046000},"page":"277-286","source":"Crossref","is-referenced-by-count":2,"title":["SMASHing regulatory sites in DNA by human-mouse sequence comparisons"],"prefix":"10.1109","author":[{"given":"M.","family":"Zavolan","sequence":"first","affiliation":[]},{"given":"N.","family":"Rajewsky","sequence":"additional","affiliation":[]},{"given":"N.D.","family":"Socci","sequence":"additional","affiliation":[]},{"given":"T.","family":"Gaasterlamd","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"crossref","first-page":"917","DOI":"10.1038\/43206","article-title":"A family of cytokine-inducible inhibitors of signalling","volume":"387","author":"starr","year":"1997","journal-title":"Nature"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1128\/MCB.13.1.690","article-title":"A novel interferon-inducible domain: structural and functional analysis of the human interferon regulatory factor 1 gene promoter","volume":"13","author":"sims","year":"1993","journal-title":"Mol Cell Biol"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/29.1.137"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1038\/sj.onc.1202544"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"1747","DOI":"10.1128\/MCB.15.3.1747","article-title":"Hepatic nuclear factor 3-and hormone-regulated expression of the phosphoenolpyruvate carboxykinase and insulin-like growth factor-binding protein 1 genes","volume":"15","author":"o'brien","year":"1995","journal-title":"Mol Cell Biol"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"2425","DOI":"10.1002\/j.1460-2075.1996.tb00600.x","article-title":"Suppression of interleukin-3-induced gene expression by a c-terminal truncated stat 5: role of stat5 in proliferation","volume":"15","author":"mui","year":"1996","journal-title":"EMBO J"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.274.27.19368"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.15.3033"},{"key":"ref35","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2105-3-30","article-title":"Computational detection of cis-regulatory modules, applied to body patterning in the early drosophila embryo","volume":"3","author":"rajewsky","year":"2002","journal-title":"BMC Bioinformatics"},{"key":"ref34","article-title":"Imposing specificity by localization: mechanism and evolvability","volume":"8","author":"ptashne","year":"1999","journal-title":"Curr Biol"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1101\/gr.225502"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1126\/science.288.5463.136"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"3148","DOI":"10.1182\/blood.V89.9.3148","article-title":"Cis, a cytokine inducible sh2 protein, is a target of the jak-stat5 pathway and modulates stat5 activation","volume":"89","author":"matsumoto","year":"1997","journal-title":"Blood"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref1","first-page":"165","article-title":"Sequence and expression of a cdna encoding myd 118: a novel myeloid differentiation primary response gene induced by multiple cytokines","volume":"6","author":"abdollahi","year":"1991","journal-title":"Oncogene"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1101\/gr.255002"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/0092-8674(92)90593-2"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1038\/sj.onc.1204390"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"8123","DOI":"10.1128\/MCB.19.12.8123","article-title":"Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates","volume":"19","author":"kraus","year":"1999","journal-title":"Mol Cell Biol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"14482","DOI":"10.1016\/S0021-9258(19)85264-X","article-title":"Two cis-regulatory elements that mediate different signaling pathways for serum-dependent activation of the junb gene","volume":"268","author":"kitabayashi","year":"1993","journal-title":"J Biol Chem"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1101\/gad.12.14.2120"},{"key":"ref25","doi-asserted-by":"crossref","DOI":"10.1186\/1475-4924-2-13","article-title":"Identification of conserved regulatory elements by comparative genome analysis","volume":"2","author":"lenhard","year":"2003","journal-title":"J Biol"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M112038200"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"7124","DOI":"10.1128\/MCB.14.11.7124","article-title":"Transcriptional regulation of the phosphoenolpyruvate carboxykinase gene by cooperation between hepatic nuclear factors","volume":"14","author":"yanuka-kashles","year":"1994","journal-title":"Mol Cell Biol"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"981","DOI":"10.1101\/gad.14.8.981","article-title":"Analysis of p53-regulated gene expression patterns using oligonucleotide arrays","volume":"14","author":"zhao","year":"2000","journal-title":"Genes Dev"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"4242","DOI":"10.1128\/MCB.13.7.4242","article-title":"Induction of cellular p53 activity by dna-damaging agents and growth arrest","volume":"13","author":"zhan","year":"1993","journal-title":"Mol Cell Biol"},{"key":"ref10","first-page":"985","article-title":"Transcriptional regulation of the junb promoter: analysis of stat-mediated signal transduction","volume":"10","author":"coffer","year":"1995","journal-title":"Oncogene"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1038\/ng780"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1006\/geno.2000.6076"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1038\/35104560"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.suppl_2.S84"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511574931"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1101\/gr.7.10.959","article-title":"Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome","volume":"10","author":"hardison","year":"1997","journal-title":"Genome Res"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1128\/MCB.14.9.6219"},{"key":"ref17","first-page":"202","article-title":"Finding regulatory elements using joint likelihoods for sequence and expression profile data","volume":"8","author":"holmes","year":"2000","journal-title":"Proc Int Conf Intell Syst Mol Biol"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1128\/MCB.21.14.4684-4699.2001"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1101\/gr.9.9.815"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/29.17.3495"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"4649","DOI":"10.1242\/dev.124.22.4649","article-title":"Green fluorescent protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae","volume":"124","author":"arnone","year":"1997","journal-title":"Development"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/84792"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(87)90354-8"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1007\/BF01188583"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/S0014-5793(97)00867-3"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.88.9.3807"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1038\/sj.onc.1201161"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1126\/science.281.5383.1680"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1210\/endo.141.11.7874"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/29.1.281"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1038\/79965"},{"key":"ref42","first-page":"1187","article-title":"Involvement of the oct-1 regulatory element of the gadd45 promoter in the p53-independent response to ultraviolet irradiation","volume":"61","author":"takahashi","year":"2001","journal-title":"Cancer Res"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1016\/S0378-1119(97)00411-3"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/17.12.1113"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1038\/35055500","article-title":"Functional annotation of a full–length mouse cDNA collection","volume":"409","author":"team","year":"2001","journal-title":"Nature"}],"event":{"name":"2003 IEEE Bioinformatics Conference. CSB2003","acronym":"CSB-03","location":"Stanford, CA, USA"},"container-title":["Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx5\/8699\/27543\/01227328.pdf?arnumber=1227328","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,1,12]],"date-time":"2024-01-12T20:23:18Z","timestamp":1705090998000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/1227328\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"references-count":53,"URL":"https:\/\/doi.org\/10.1109\/csb.2003.1227328","relation":{},"subject":[]}}