{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T01:43:25Z","timestamp":1740102205224,"version":"3.37.3"},"reference-count":19,"publisher":"IEEE","license":[{"start":{"date-parts":[[2023,10,9]],"date-time":"2023-10-09T00:00:00Z","timestamp":1696809600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,10,9]],"date-time":"2023-10-09T00:00:00Z","timestamp":1696809600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)","doi-asserted-by":"publisher","award":["414984028 - SFB 1404 FONDA"],"award-info":[{"award-number":["414984028 - SFB 1404 FONDA"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,10,9]]},"DOI":"10.1109\/e-science58273.2023.10254924","type":"proceedings-article","created":{"date-parts":[[2023,9,25]],"date-time":"2023-09-25T18:08:05Z","timestamp":1695665285000},"page":"1-7","source":"Crossref","is-referenced-by-count":0,"title":["From Program Chains to Exploratory Workflows: PopinSnake for Genomic Insertion Detection"],"prefix":"10.1109","author":[{"given":"Kedi","family":"Cao","sequence":"first","affiliation":[{"name":"Humboldt-Universit&#x00E4;t zu Berlin"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nourhan","family":"Elfaramawy","sequence":"additional","affiliation":[{"name":"Humboldt-Universit&#x00E4;t zu Berlin"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthias","family":"Weidlich","sequence":"additional","affiliation":[{"name":"Humboldt-Universit&#x00E4;t zu Berlin"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Birte","family":"Kehr","sequence":"additional","affiliation":[{"name":"Leibniz Institute for Immunotherapy"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-021-01254-9"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1828-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv273"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab749"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx254"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/SSDM.2004.1311241"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.future.2014.10.008"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.3820"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts480"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.12688\/f1000research.29032.2"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giab008"},{"key":"ref12","article-title":"Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM","author":"Li","year":"2013","journal-title":"arXiv"},{"key":"ref13","article-title":"Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files","author":"Joshi","year":"2011","journal-title":"(Version 1.33) [Software]"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-40453-5_28"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1007\/10968987_3"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-20850-5"},{"key":"ref18","article-title":"Bcmap: fast alignment-free barcode mapping for linked-read sequencing data","author":"L\u00fcpken","year":"2022","journal-title":"bioRxiv"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2022.08.004"}],"event":{"name":"2023 IEEE 19th International Conference on e-Science (e-Science)","start":{"date-parts":[[2023,10,9]]},"location":"Limassol, Cyprus","end":{"date-parts":[[2023,10,13]]}},"container-title":["2023 IEEE 19th International Conference on e-Science (e-Science)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/10254737\/10254662\/10254924.pdf?arnumber=10254924","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T12:08:46Z","timestamp":1725451726000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10254924\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,10,9]]},"references-count":19,"URL":"https:\/\/doi.org\/10.1109\/e-science58273.2023.10254924","relation":{},"subject":[],"published":{"date-parts":[[2023,10,9]]}}}