{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T19:37:31Z","timestamp":1771702651970,"version":"3.50.1"},"reference-count":25,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,4]]},"DOI":"10.1109\/ipdpsw.2010.5470903","type":"proceedings-article","created":{"date-parts":[[2010,5,28]],"date-time":"2010-05-28T14:25:42Z","timestamp":1275056742000},"page":"1-8","source":"Crossref","is-referenced-by-count":7,"title":["A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA"],"prefix":"10.1109","author":[{"family":"Zhihui Du","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Zhaoming Yin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David A.","family":"Bader","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/12.4.327"},{"key":"ref11","first-page":"47","article-title":"Using Dirichlet mixture priors to derive hidden Markov models for protein families","author":"brown","year":"1993","journal-title":"Proc of First Int Conf on Intelligent Systems for Molecular Biology"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511790492"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg158"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/1201775.882362"},{"key":"ref15","article-title":"CUDA Compute Unitfed Device Architecture","year":"2008","journal-title":"Programming Guide"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-S2-S10"},{"key":"ref17","first-page":"1 c6","article-title":"Design and Implementation of the Smith-Waterman Algorithm on the CUDA-Compatible GPU","author":"munekawa","year":"2000","journal-title":"8th IEEE International Conference on Bioinformatics and Bioengineering"},{"key":"ref18","first-page":"80","volume":"26","author":"owens","year":"2007","journal-title":"A Survey of General-purpose Computation on Graphics Hardware"},{"key":"ref19","article-title":"BioSequence Database Scanning on a GPU","author":"liu","year":"2006","journal-title":"Proc 20th IEEE Int Parallel and Distributed Processing Symp (High Performance Computational Biology (HiCOMB) Workshop)"},{"key":"ref4","first-page":"188","article-title":"GPU Accelerate Smith-Waterman","author":"liu","year":"2006","journal-title":"Proc Int'l Conf Computational Science (ICC 06)"},{"key":"ref3","first-page":"12","article-title":"A parallel hybrid genetic algorithm for multiple protein sequence alignment","volume":"1","author":"tate","year":"2002","journal-title":"Evolutionary Computation 2002 CEC'02 Proceedings of the 2002 Congress On IEEE"},{"key":"ref6","first-page":"1270","article-title":"Streaming Algorithms for Biological Sequence Alignment on GPUs","volume":"18","author":"liu","year":"2007","journal-title":"IEEE TPDS"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/SC.2005.18"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(81)90087-5"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1007\/BF02603120"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/9.3.267"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/5.18626"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2007.70712"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1007\/11945918_37"},{"key":"ref22","first-page":"13","article-title":"Cell-SWat: Modeling and Scheduling Wavefront Computations on the Cell Broadband Engine","author":"aji","year":"0","journal-title":"Proceedings of the 2008 ACM International Conference on Computing Frontiers"},{"key":"ref21","doi-asserted-by":"crossref","DOI":"10.1145\/1015706.1015800","article-title":"Brook for GPUs: Stream Computing on Graphics Hardware","author":"buck","year":"2004","journal-title":"ACM Trans on Graphics"},{"key":"ref24","author":"jiang","year":"2006","journal-title":"Multiple Sequence Alignment based on k-mer and FFT"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkf436"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/14.2.157"}],"event":{"name":"Distributed Processing, Workshops and Phd Forum (IPDPSW)","location":"Atlanta, GA, USA","start":{"date-parts":[[2010,4,19]]},"end":{"date-parts":[[2010,4,23]]}},"container-title":["2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx5\/5465895\/5470678\/05470903.pdf?arnumber=5470903","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,19]],"date-time":"2017-06-19T04:48:48Z","timestamp":1497847728000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/5470903\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,4]]},"references-count":25,"URL":"https:\/\/doi.org\/10.1109\/ipdpsw.2010.5470903","relation":{},"subject":[],"published":{"date-parts":[[2010,4]]}}}