{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T11:06:12Z","timestamp":1725707172099},"reference-count":18,"publisher":"IEEE","license":[{"start":{"date-parts":[[2022,5,1]],"date-time":"2022-05-01T00:00:00Z","timestamp":1651363200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,5,1]],"date-time":"2022-05-01T00:00:00Z","timestamp":1651363200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,5]]},"DOI":"10.1109\/ipdpsw55747.2022.00038","type":"proceedings-article","created":{"date-parts":[[2022,8,5]],"date-time":"2022-08-05T00:37:41Z","timestamp":1659659861000},"page":"162-162","source":"Crossref","is-referenced-by-count":2,"title":["Algorithmic Improvement and GPU Acceleration of the GenASM Algorithm"],"prefix":"10.1109","author":[{"given":"Joel","family":"Lindegger","sequence":"first","affiliation":[{"name":"ETH Z&#x00FC;rich"}]},{"given":"Damla Senol","family":"Cali","sequence":"additional","affiliation":[{"name":"Bionano Genomics"}]},{"given":"Mohammed","family":"Alser","sequence":"additional","affiliation":[{"name":"ETH Z&#x00FC;rich"}]},{"given":"Juan","family":"Gomez-Luna","sequence":"additional","affiliation":[{"name":"ETH Z&#x00FC;rich"}]},{"given":"Onur","family":"Mutlu","sequence":"additional","affiliation":[{"name":"ETH Z&#x00FC;rich"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(82)90398-9"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-021-02443-7"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1145\/2746539.2746612"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu856"},{"key":"ref5","article-title":"SneakySnake: a fast and accurate universal genome prealignment filter for CPUs, GPUs and FPGAs","author":"Alser","year":"2020","journal-title":"Bioinformatics"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2021.3088396"},{"key":"ref7","article-title":"GenStore: a high-performance in-storage processing system for genome sequence analysis","author":"Ghiasi","year":"2022","journal-title":"ASPLOS"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw753"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2014-8"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-3086-9"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-020-03685-1"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1007\/s12539-017-0225-8"},{"key":"ref14","article-title":"GenASM: A high-performance, low-power approximate string matching acceleration framework for genome sequence analysis","author":"Cali","year":"2020","journal-title":"MICRO"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2019.2910009"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2020.3013728"},{"article-title":"NVIDIA RTX A6000 Graphics Card","volume-title":"NVIDIA","year":"2020","key":"ref17"},{"key":"ref18","article-title":"PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores","author":"Ono","year":"2020","journal-title":"Bioinformatics"}],"event":{"name":"2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)","start":{"date-parts":[[2022,5,30]]},"location":"Lyon, France","end":{"date-parts":[[2022,6,3]]}},"container-title":["2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/9835152\/9835156\/09835672.pdf?arnumber=9835672","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,1,24]],"date-time":"2024-01-24T02:00:05Z","timestamp":1706061605000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9835672\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,5]]},"references-count":18,"URL":"https:\/\/doi.org\/10.1109\/ipdpsw55747.2022.00038","relation":{},"subject":[],"published":{"date-parts":[[2022,5]]}}}