{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T16:46:24Z","timestamp":1782405984078,"version":"3.54.5"},"reference-count":35,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"8","license":[{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"name":"Science and Technology Development Program of Jilin Province of China","award":["20210101174JC"],"award-info":[{"award-number":["20210101174JC"]}]},{"name":"National Library of Medicine of the National Institute of Health","award":["5R01LM013392"],"award-info":[{"award-number":["5R01LM013392"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE J. Biomed. Health Inform."],"published-print":{"date-parts":[[2024,8]]},"DOI":"10.1109\/jbhi.2024.3383610","type":"journal-article","created":{"date-parts":[[2024,4,3]],"date-time":"2024-04-03T13:48:05Z","timestamp":1712152085000},"page":"5007-5019","source":"Crossref","is-referenced-by-count":8,"title":["pathCLIP: Detection of Genes and Gene Relations From Biological Pathway Figures Through Image-Text Contrastive Learning"],"prefix":"10.1109","volume":"28","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3284-9506","authenticated-orcid":false,"given":"Fei","family":"He","sequence":"first","affiliation":[{"name":"School of Information Science and Technology, Northeast Normal University, Changchun, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-9866-4305","authenticated-orcid":false,"given":"Kai","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Information Science and Technology, Northeast Normal University, Changchun, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3796-0155","authenticated-orcid":false,"given":"Zhiyuan","family":"Yang","sequence":"additional","affiliation":[{"name":"School of Information Science and Technology, Northeast Normal University, Changchun, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3969-2679","authenticated-orcid":false,"given":"Yibo","family":"Chen","sequence":"additional","affiliation":[{"name":"Department of Electrical Engineer and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7173-9414","authenticated-orcid":false,"given":"Richard D.","family":"Hammer","sequence":"additional","affiliation":[{"name":"School of Medicine, University of Missouri, Columbia, MO, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4809-0514","authenticated-orcid":false,"given":"Dong","family":"Xu","sequence":"additional","affiliation":[{"name":"Department of Electrical Engineer and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6145-8096","authenticated-orcid":false,"given":"Mihail","family":"Popescu","sequence":"additional","affiliation":[{"name":"School of Medicine, University of Missouri, Columbia, MO, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.biopha.2022.113144"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/27.1.29"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab1028"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz389"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2200-8"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.3390\/cancers14040934"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-020-0193-2"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-021-04099-3"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-02181-2"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1109\/bibm52615.2021.9669391"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR42600.2020.00975"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2021.acl-long.393"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.5555\/3495724.3497510"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR46437.2021.01549"},{"key":"ref15","article-title":"Hierarchical text-conditional image generation with\n                        CLIP latents","author":"Ramesh","year":"2022","journal-title":"OpenAI"},{"key":"ref16","article-title":"Open-vocabulary object detection via vision and\n                        language knowledge distillation","volume-title":"Proc.\n                        Int. Conf. Learn. Representations","author":"Gu"},{"key":"ref17","first-page":"5207","article-title":"CLIPDraw: Exploring text-to-drawing synthesis through\n                        language-image encoders","author":"Frans","year":"2022","journal-title":"NIPS\n                        22"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.3389\/fmats.2021.740754"},{"key":"ref19","article-title":"PyMuPDF-utilities","author":"McKie","year":"2022","journal-title":"GitHub Repository"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1007\/s11263-007-0090-8"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2016.90"},{"key":"ref22","first-page":"23803","article-title":"Cross-entropy loss functions: Theoretical analysis and\n                        applications","volume-title":"Proc. 40th Int. Conf. Mach.\n                        Learn.","author":"Mao","year":"2023"},{"key":"ref23","article-title":"Adam: A method for stochastic\n                        optimization","author":"Kingma","year":"2014"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV.2017.324"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1145\/2964284.2967274"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/TCI.2016.2644865"},{"key":"ref27","first-page":"1139","article-title":"On the importance of initialization and momentum in\n                        deep learning","volume-title":"Proc. 30th Int. Conf. Mach.\n                        Learn.","author":"Sutskever"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1109\/ICPR.2006.479"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz682"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1810.04805"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-s2-s2"},{"key":"ref32","article-title":"AdamW and Super-convergence is now the fastest way to\n                        train neural nets","author":"Gugger","year":"2018"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac888"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.21105\/joss.00861"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-31865-1_25"}],"container-title":["IEEE Journal of Biomedical and Health Informatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/6221020\/10625760\/10490093.pdf?arnumber=10490093","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,8,7]],"date-time":"2024-08-07T13:53:50Z","timestamp":1723038830000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10490093\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,8]]},"references-count":35,"journal-issue":{"issue":"8"},"URL":"https:\/\/doi.org\/10.1109\/jbhi.2024.3383610","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2023.10.31.564859","asserted-by":"object"}]},"ISSN":["2168-2194","2168-2208"],"issn-type":[{"value":"2168-2194","type":"print"},{"value":"2168-2208","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,8]]}}}