{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,9]],"date-time":"2025-12-09T06:34:31Z","timestamp":1765262071640,"version":"3.46.0"},"reference-count":46,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"12","license":[{"start":{"date-parts":[[2025,12,1]],"date-time":"2025-12-01T00:00:00Z","timestamp":1764547200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2025,12,1]],"date-time":"2025-12-01T00:00:00Z","timestamp":1764547200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,12,1]],"date-time":"2025-12-01T00:00:00Z","timestamp":1764547200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"name":"Guangzhou National Laboratory","award":["ZL-SRPG2200701","YW-JCZD0104"],"award-info":[{"award-number":["ZL-SRPG2200701","YW-JCZD0104"]}]},{"name":"National Key Research and Development Program of China","award":["2021YFC2302001"],"award-info":[{"award-number":["2021YFC2302001"]}]},{"name":"CAMS Innovation Fund for Medical Sciences","award":["2021-1-I2M-051","2021-I2M-1-001"],"award-info":[{"award-number":["2021-1-I2M-051","2021-I2M-1-001"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE J. Biomed. Health Inform."],"published-print":{"date-parts":[[2025,12]]},"DOI":"10.1109\/jbhi.2025.3529598","type":"journal-article","created":{"date-parts":[[2025,1,14]],"date-time":"2025-01-14T14:59:57Z","timestamp":1736866797000},"page":"9147-9157","source":"Crossref","is-referenced-by-count":0,"title":["PhenoAlign: A Hybrid Data-Knowledge-Driven Approach for Precisely Aligning Phenotype Information in Medical Texts"],"prefix":"10.1109","volume":"29","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7521-4295","authenticated-orcid":false,"given":"Tao","family":"Yang","sequence":"first","affiliation":[{"name":"Guangzhou Medical University, Guangzhou, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2468-8631","authenticated-orcid":false,"given":"Luming","family":"Chen","sequence":"additional","affiliation":[{"name":"Guangzhou Medical University, Guangzhou, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9314-262X","authenticated-orcid":false,"given":"Lizong","family":"Deng","sequence":"additional","affiliation":[{"name":"Institute of Systems Medicine, Chinese Academy of Medical Sciences &amp; Peking Union Medical College, Beijing, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Taijiao","family":"Jiang","sequence":"additional","affiliation":[{"name":"Guangzhou National Laboratory, Guangzhou, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMra1615014"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.artmed.2019.02.003"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41746-020-0221-y"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/s41597-023-02814-8"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/s41746-019-0091-3"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-022-24494-x"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-023-02504-3"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbv083"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3932"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz386"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1038\/s41436-018-0381-1"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab019"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.2196\/26892"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/jamia\/ocv134"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1109\/CBMS.2013.6627810"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2022.3177421"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2017.11.011"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2019.103122"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1186\/s13326-017-0162-9"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/jamia\/ocx110"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1038\/527S14a"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1038\/s41746-019-0110-4"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/jamia\/ocz158"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2020.103541"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1136\/jamia.2009.002733"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.2196\/21929"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.3390\/app11146421"},{"key":"ref28","first-page":"102","article-title":"BRAT: A web-based tool for NLP-Assisted text annotation","volume-title":"Proc. Demonstrations 13th Conf. Eur. Chapter Assoc. Comput. Linguistics","author":"Stenetorp"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1810.04805"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-023-02448-8"},{"article-title":"Capabilities of GPT-4 on medical challenge problems","year":"2023","author":"Nori","key":"ref31"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/TKDE.2023.3310002"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2019.103372"},{"article-title":"How important is a neuron?","year":"2018","author":"Dhamdhere","key":"ref34"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.79.8.2554"},{"article-title":"A survey of large language models","year":"2023","author":"Zhao","key":"ref36"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1007\/s10439-023-03306-x"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1109\/tpami.2024.3483273"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1186\/s12967-023-04576-8"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1109\/TKDE.2024.3352100"},{"article-title":"A survey of large language models in medicine: Progress, application, and challenge","year":"2023","author":"Zhou","key":"ref41"},{"article-title":"Retrieval-augmented generation for large language models: A survey","year":"2023","author":"Gao","key":"ref42"},{"key":"ref43","first-page":"9459","article-title":"Retrieval-augmented generation for knowledge-intensive NLP tasks","volume-title":"Proc. Adv. Neural Inf. Process. Syst.","volume":"33","author":"Lewis","year":"2020"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-023-06291-2"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-023-00626-4"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1093\/database\/bau045"}],"container-title":["IEEE Journal of Biomedical and Health Informatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/6221020\/11284538\/10841388.pdf?arnumber=10841388","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,9]],"date-time":"2025-12-09T06:18:51Z","timestamp":1765261131000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10841388\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,12]]},"references-count":46,"journal-issue":{"issue":"12"},"URL":"https:\/\/doi.org\/10.1109\/jbhi.2025.3529598","relation":{},"ISSN":["2168-2194","2168-2208"],"issn-type":[{"type":"print","value":"2168-2194"},{"type":"electronic","value":"2168-2208"}],"subject":[],"published":{"date-parts":[[2025,12]]}}}