{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,16]],"date-time":"2026-06-16T14:47:05Z","timestamp":1781621225957,"version":"3.54.5"},"reference-count":59,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["2003749"],"award-info":[{"award-number":["2003749"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["2144751"],"award-info":[{"award-number":["2144751"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["2153525"],"award-info":[{"award-number":["2153525"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["2228028"],"award-info":[{"award-number":["2228028"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE J. Emerg. Sel. Topics Circuits Syst."],"published-print":{"date-parts":[[2023,3]]},"DOI":"10.1109\/jetcas.2023.3241545","type":"journal-article","created":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T18:50:11Z","timestamp":1675277411000},"page":"332-343","source":"Crossref","is-referenced-by-count":11,"title":["Aligner-D: Leveraging In-DRAM Computing to Accelerate DNA Short Read Alignment"],"prefix":"10.1109","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6823-2700","authenticated-orcid":false,"given":"Fan","family":"Zhang","sequence":"first","affiliation":[{"name":"School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2289-6381","authenticated-orcid":false,"given":"Shaahin","family":"Angizi","sequence":"additional","affiliation":[{"name":"Department of Electrical and Computer Engineering, New Jersey Institute of Technology, Newark, NJ, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiao","family":"Sun","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Central Florida, Orlando, FL, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3605-9373","authenticated-orcid":false,"given":"Wei","family":"Zhang","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Central Florida, Orlando, FL, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7989-6297","authenticated-orcid":false,"given":"Deliang","family":"Fan","sequence":"additional","affiliation":[{"name":"School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref1","first-page":"273","article-title":"Ambit: In-memory accelerator for bulk bitwise operations using commodity DRAM technology","volume-title":"Proc. 50th Annu. IEEE\/ACM Int. Symp. Microarchitecture","author":"Seshadri"},{"key":"ref2","first-page":"288","article-title":"DRISA: A DRAM-based reconfigurable in-situ accelerator","volume-title":"Proc. 50th Annu. IEEE\/ACM Int. Symp. Microarchit.","author":"Li"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1109\/ICCAD45719.2019.8942101"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1145\/3173162.3173193"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/LCA.2018.2854700"},{"key":"ref6","first-page":"1","article-title":"AlignS: A processing-in-memory accelerator for DNA short read alignment leveraging SOT-MRAM","volume-title":"Proc. 56th Annu. Design Autom. Conf.","author":"Angizi"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0065632"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1109\/ISCA.2014.6853226"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/TBCAS.2017.2760109"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2016.2535385"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.3390\/make1010005"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/3007787.3001140"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1145\/3007787.3001139"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/ISCAS.2019.8702206"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/IEDM.2015.7409720"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/PACT.2019.00030"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1109\/IEDM.2016.7838346"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1145\/2897937.2898010"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/HPCA.2017.21"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/ISCA.2018.00040"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1109\/TCAD.2018.2821565"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1145\/3299874.3317984"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/LCA.2022.3220084"},{"key":"ref26","first-page":"1","article-title":"ReD-LUT: Reconfigurable in-DRAM LUTs enabling massive parallel computation","volume-title":"Proc. 41st IEEE\/ACM Int. Conf. Comput.-Aided Design","author":"Zhou"},{"key":"ref27","volume-title":"Hybrid Memory Cube Specification 2.0","year":"2018"},{"key":"ref28","volume-title":"6th Generation Intel Core Processor Family Datasheet","year":"2022"},{"key":"ref29","volume-title":"Geforce GTX 1080 TI","year":"2022"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1109\/LCA.2015.2414456"},{"key":"ref31","article-title":"Accelerating bulk bit-wise X(N)OR operation in processing-in-DRAM platform","author":"Angizi","year":"2019","journal-title":"arXiv:1904.05782"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/LCA.2015.2434872"},{"key":"ref33","first-page":"185","article-title":"RowClone: Fast and energy-efficient in-DRAM bulk data copy and initialization","volume-title":"Proc. 46th Annu. IEEE\/ACM Int. Symp. Microarchit.","author":"Seshadri"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1109\/TCSI.2019.2945617"},{"issue":"9","key":"ref35","first-page":"108","article-title":"Intel 1103-MOS memory that defied cores","volume":"46","author":"Sideris","year":"1973","journal-title":"Electronics"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1109\/DAC.2018.8465866"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/JPROC.2015.2455551"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1109\/DAC.2018.8465882"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2017.3211121"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-018-4460-0"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1145\/3386263.3407590"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1109\/AHS.2018.8541417"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1109\/TVLSI.2002.801578"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1109\/I2CT.2017.8226292"},{"key":"ref45","volume-title":"Non-volatile in-memory computing device","author":"Akerib","year":"2015"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1109\/DAC.2018.8465706"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.23919\/DATE48585.2020.9116303"},{"key":"ref48","volume-title":"Ncsu EDA freepdk45","year":"2011"},{"key":"ref49","volume-title":"Synopsys Design Compiler","year":"2014"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1109\/LCA.2015.2402435"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1109\/ASP-DAC47756.2020.9045555"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1145\/3383669.3398279"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1007\/s11390-020-0825-3"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1109\/JXCDC.2020.2987527"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr708"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1109\/TCAD.2019.2915318"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1109\/ISVLSI.2019.00044"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1145\/3060403.3060460"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1109\/DAC18074.2021.9586096"}],"container-title":["IEEE Journal on Emerging and Selected Topics in Circuits and Systems"],"original-title":[],"link":[{"URL":"https:\/\/ieeexplore.ieee.org\/ielam\/5503868\/10078357\/10034770-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/5503868\/10078357\/10034770.pdf?arnumber=10034770","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,13]],"date-time":"2024-02-13T13:28:55Z","timestamp":1707830935000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10034770\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,3]]},"references-count":59,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/jetcas.2023.3241545","relation":{},"ISSN":["2156-3357","2156-3365"],"issn-type":[{"value":"2156-3357","type":"print"},{"value":"2156-3365","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,3]]}}}